Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26c10
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032...    33   0.15 
09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503     28   7.7  
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512     28   7.7  

>04_03_0686 +
           18701543-18701917,18702658-18702702,18703175-18703289,
           18703644-18703713,18703796-18703844,18704319-18704416,
           18704984-18705122,18705261-18705410
          Length = 346

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +1

Query: 430 AKFYNVIDFCKGLE-IAHDDILDCNWD 507
           A+FYNV   C  +E IAHD +LDC+WD
Sbjct: 306 ARFYNVQPVC--IEGIAHDMMLDCSWD 330


>09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503
          Length = 685

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 27  PYVCTFRICKIQTWTRSRCSIGRTW 101
           PY  T  + K     R+ CSIGR W
Sbjct: 55  PYAHTIELTKTDISDRNLCSIGRVW 79


>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
          Length = 957

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 502 WDSDQVYHLNEIIFHKQKSXRDLNSLGALFATKQGLLKILMRFKF*QQK 648
           +D D +  LNE++  ++K  +DL     L+  K  L ++  R K  + K
Sbjct: 660 YDQDALERLNELVVKREKEKQDLERELELYRRKVHLFEVKERRKMSRHK 708


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,030,957
Number of Sequences: 37544
Number of extensions: 277345
Number of successful extensions: 690
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)