Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26c09
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...   179   3e-46
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    59   6e-10
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    40   3e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.10 
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.6  
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    27   2.8  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   3.8  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    26   5.0  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   6.6  
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    25   8.7  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score =  179 bits (435), Expect = 3e-46
 Identities = 93/129 (72%), Positives = 104/129 (80%), Gaps = 3/129 (2%)
 Frame = +3

Query: 237 DVQFED--NLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDS 407
           D QFED  +LP ILNALEV+   + RLVLEVAQH+GENTVRTIAMDGTEGLVRG  V+D+
Sbjct: 66  DCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDT 125

Query: 408 GSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIK 587
           GSPI IPVG  TLGRI+NVIGEP+DERGPI   K + IHA+AP F + S   EIL TGIK
Sbjct: 126 GSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIK 185

Query: 588 VVDLLAPYA 614
           VVDLLAPYA
Sbjct: 186 VVDLLAPYA 194


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 58.8 bits (136), Expect = 6e-10
 Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
 Frame = +3

Query: 318 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 494
           +A +L  +TV  +   G + LVR G+ V  +   + +PVG   LGR+++ +G PID +GP
Sbjct: 90  MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148

Query: 495 IPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 608
           I T +   +  +AP  +  +   E + TG+K +D + P
Sbjct: 149 IKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVP 186


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
 Frame = +3

Query: 309 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 485
           VLEVA H     V     +GT G+ VR   +  +G  +RIPV  + LGR+ N  G PID+
Sbjct: 63  VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDK 118

Query: 486 RGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVD 596
              +  +    I+            +E++ TGI  +D
Sbjct: 119 GPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSID 155


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 24/92 (26%), Positives = 40/92 (43%)
 Frame = -2

Query: 583 IPVTRISCCTDMSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPE 404
           +P T  SC T  S  +G S+ ++  ++  + P S+  + I +      S  T      P 
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTN-SSPLPT 280

Query: 403 SSTGCPRTKPSVPSMAMVRTVFSPKCWATSST 308
           +ST C  T  S+P      T  +P    TS++
Sbjct: 281 TSTSC-TTSTSIPPTGNSTTPVTPTVPPTSTS 311


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 493 GPRSSIGSPITLMMRPRVSA-PTGIRIGEPESSTGCPRTKPSVPSM 359
           G R++ G+P  +    R+++ PT I    PES       K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
 Frame = +3

Query: 300 PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPI 479
           P +  E  +H G N+         EG+V+    L++  P+ IPV  +      N IGE  
Sbjct: 10  PAIKNEPPKHYGPNSA------DREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGE-- 61

Query: 480 DERGPIPTDKTAA-IHAEAPEFVDMSVQQEILVTGIKVVDLLAPYA 614
            +R P    K  A  H    + V+ ++  E  + G KV + L P+A
Sbjct: 62  -QRCPFEHKKVVARYHRAGAKHVEDAI--EAALRGKKVWESL-PFA 103


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 118 NPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSV 228
           NPF N ++S+++MP      L+NLQE + +   P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 369 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 485
           T GL  G PV  +G P+ + +G      I + I  P+ +
Sbjct: 77  TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 433 PTGIRIGEPESSTGCPRTKPSVPSMAMV 350
           P G  +G PES+      KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822


>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 294 RSPRLVLEVAQHLGENTVRTIAMD 365
           R+P LVL+ A  LGEN    +  D
Sbjct: 362 RNPSLVLDSANQLGENVAWPVQYD 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,709
Number of Sequences: 5004
Number of extensions: 51642
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)