Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26c06
(509 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 229 1e-61
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 209 2e-55
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 179 2e-46
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 175 4e-45
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 150 1e-37
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 122 3e-29
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 108 4e-25
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 88 8e-19
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 60 2e-10
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 29 0.53
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 27 1.6
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 27 2.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.2
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 26 2.9
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.8
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 3.8
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 3.8
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 5.0
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 6.6
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 25 6.6
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 25 8.7
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.7
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 8.7
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 8.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.7
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 8.7
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 229 bits (561), Expect = 1e-61
Identities = 104/141 (73%), Positives = 115/141 (81%)
Frame = +2
Query: 86 FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGD 265
FFDV + PLG+IV +L DV PKT NFRALCTGEKG+GY GS FHRVIP FMLQGGD
Sbjct: 5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGD 64
Query: 266 FTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRH 445
FT NGTGGKSIYG KF DENF LKH PG+LSMANAG +TNGSQFFITTV T WLDG+H
Sbjct: 65 FTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKH 124
Query: 446 VVFGNVVEGMEVVKQIETFGS 508
VVFG V EGM+VVK++E+ GS
Sbjct: 125 VVFGEVTEGMDVVKKVESLGS 145
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 209 bits (511), Expect = 2e-55
Identities = 96/146 (65%), Positives = 111/146 (76%)
Frame = +2
Query: 56 NTGKMSLPRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRV 235
N G V+FD+ D LG++ I L PKT ENFRAL TGEKGFGY+GSIFHRV
Sbjct: 20 NRGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRV 79
Query: 236 IPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITT 415
IPNFM+QGGD T +GTGGKSIYG++F DENF L H PG+LSMANAG D+NGSQFFITT
Sbjct: 80 IPNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITT 139
Query: 416 VKTSWLDGRHVVFGNVVEGMEVVKQI 493
VKT WLDG HVVFG V+ G ++VK+I
Sbjct: 140 VKTPWLDGHHVVFGEVLSGYDIVKKI 165
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 179 bits (436), Expect = 2e-46
Identities = 85/148 (57%), Positives = 106/148 (71%), Gaps = 7/148 (4%)
Frame = +2
Query: 77 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGE------KGFGYKGSIFHRVI 238
P VF D+ +D LG+I I L S + PKT ENFR CTGE K GYK S FHR+I
Sbjct: 5 PVVFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRII 64
Query: 239 PNFMLQGGDFTNHNGTGGKSIYGNK-FEDENFTLKHTGPGVLSMANAGADTNGSQFFITT 415
FM+QGGDF + +GTG +I+ ++ F DENFTLKH PG+LSMANAG D+NG QFFITT
Sbjct: 65 QGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITT 124
Query: 416 VKTSWLDGRHVVFGNVVEGMEVVKQIET 499
V +LDG+HVVFG V+EG ++VK+IE+
Sbjct: 125 VPCDFLDGKHVVFGEVIEGYDIVKEIES 152
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 175 bits (425), Expect = 4e-45
Identities = 86/141 (60%), Positives = 101/141 (71%), Gaps = 4/141 (2%)
Frame = +2
Query: 86 FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG----YKGSIFHRVIPNFML 253
+F +++D I EL +V PKT +NF +LC G + G YKGS FHRVI NFML
Sbjct: 6 YFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFML 65
Query: 254 QGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWL 433
QGGDFT NGTGG+SIYG KFEDENF LKH P +LSMANAG +TNGSQFFITTV T L
Sbjct: 66 QGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHL 125
Query: 434 DGRHVVFGNVVEGMEVVKQIE 496
DG+HVVFG V++G V+ IE
Sbjct: 126 DGKHVVFGKVIQGKSTVRTIE 146
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 150 bits (364), Expect = 1e-37
Identities = 74/127 (58%), Positives = 94/127 (74%), Gaps = 1/127 (0%)
Frame = +2
Query: 116 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGK 295
LGKI+IEL ++ PKTC+NF L ++G+ Y G IFHRVIP+F++QGGD T G GG
Sbjct: 10 LGKILIELYTEHAPKTCQNFYTLA--KEGY-YDGVIFHRVIPDFVIQGGDPTG-TGRGGT 65
Query: 296 SIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEG 472
SIYG+KF+DE + L HTG G+LSMANAG +TN SQFFIT T WLDG+H +FG VV G
Sbjct: 66 SIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSG 125
Query: 473 MEVVKQI 493
+ V K++
Sbjct: 126 LSVCKRM 132
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 122 bits (294), Expect = 3e-29
Identities = 64/127 (50%), Positives = 83/127 (65%), Gaps = 1/127 (0%)
Frame = +2
Query: 119 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKS 298
G I I+L + PK +NF E G+ Y +IFHR+I NFM+QGGD +GTGG+S
Sbjct: 464 GDISIKLYPEEAPKAVQNFTT--HAENGY-YDNTIFHRIIKNFMIQGGDPLG-DGTGGES 519
Query: 299 IYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGM 475
I+ FEDE + LKH P +SMAN+G +TNGSQFFITT T WLDG+H +F G+
Sbjct: 520 IWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAGL 579
Query: 476 EVVKQIE 496
+VV +IE
Sbjct: 580 DVVHRIE 586
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 108 bits (260), Expect = 4e-25
Identities = 59/127 (46%), Positives = 79/127 (62%), Gaps = 1/127 (0%)
Frame = +2
Query: 119 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKS 298
G+I IEL +D P NF L ++G+ Y+ +IFHR I FM+QGGD + G GG+S
Sbjct: 285 GEINIELHTDYAPHAVYNFVQLA--KQGY-YRNTIFHRNIARFMIQGGD-PSGTGRGGQS 340
Query: 299 IYGNKFEDENFT-LKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGM 475
I+G F+DE LKH G++SMAN G +TNGSQFFI LD +H +FG VV G+
Sbjct: 341 IWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVGGL 400
Query: 476 EVVKQIE 496
V+ +E
Sbjct: 401 NVLDALE 407
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 87.8 bits (208), Expect = 8e-19
Identities = 52/117 (44%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Frame = +2
Query: 119 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKS 298
G I IEL PK C NF LC +G+ Y G+I HRV+P F++QGGD T G GG+S
Sbjct: 22 GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQGGDPTG-TGMGGES 77
Query: 299 IYGNKFEDENF-TLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVV 466
IYG F E L+ G++ MA + N SQFFIT T +G+ +FG VV
Sbjct: 78 IYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFGRVV 134
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 60.1 bits (139), Expect = 2e-10
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 15/144 (10%)
Frame = +2
Query: 107 DAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGT 286
+ +G +VI+L PKTCENF LC K Y F+ + N+ Q GD G
Sbjct: 6 ETTVGDLVIDLFVKEAPKTCENFLKLC---KLKYYNFCPFYNIQHNYTCQTGDPLGPTGD 62
Query: 287 GGKSIY-----GNKFEDENF--TLKHTGPGVLSMANAGADTN-------GSQFFIT-TVK 421
GG+ ++ G +F F +L H G++SM+ A + GSQF IT +
Sbjct: 63 GGRCVWNVLNKGTRFFKAEFNPSLVHNKMGLVSMSTATISSRDDKLLVCGSQFIITLSDN 122
Query: 422 TSWLDGRHVVFGNVVEGMEVVKQI 493
LD R+ ++G V EG + + +I
Sbjct: 123 LEGLDERYPIYGQVAEGFDTLLKI 146
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 28.7 bits (61), Expect = 0.53
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +3
Query: 210 TRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTRISPLSTQDLASS 362
+RA S++S I KE +P+ITA SP +A S + ISP + + +S
Sbjct: 321 SRAAASLLS--ILDSKEKNTPSITAKAGSPQSAPSKASYISPYARPGITTS 369
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 95 VTVDDAPLGKIVIELRSDVTPKTCENFRALCT 190
V D+ P+GKI+I R D+ N C+
Sbjct: 19 VATDNIPIGKIIIRKRVDILSLDSANLTRTCS 50
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 26.6 bits (56), Expect = 2.2
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 391 WFPVLHHHC 417
WFP +HHHC
Sbjct: 97 WFPEVHHHC 105
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 171 TSVPCALARKASVTRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTRISPLST 344
TS C + S+ S +S+PI+ TS + T++ P++ S T SPL T
Sbjct: 225 TSTSCTTS--TSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
Score = 26.2 bits (55), Expect = 2.9
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 171 TSVPCALARKASVTRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTRISPLST 344
TS C + T S+ S+PI+ TS + T++ P++ S T SPL T
Sbjct: 168 TSTSCTTSTSIPPTGGSSSL-STPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 25.0 bits (52), Expect = 6.6
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 171 TSVPCALARKASVTRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTRISPLST 344
TS C + T S+ S+PI+ TS + T++ P++ S T +PL T
Sbjct: 111 TSTSCTTSTSIPPTGGSSSL-STPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 2.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 486 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCL 337
LT +P TTF T +P + +V ++++ PL+ + P PV L
Sbjct: 37 LTEQLP-TTFRITASIPHATQVRDYFIEHYYPLIENARTEDAKIPLPVSL 85
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 3.8
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +3
Query: 147 TSLQRRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTR 326
TSL +S+P + + A+ T S+ SS + S + + L S +TAIS +
Sbjct: 12 TSLSSSASSSIPASSSSAAAST----SLSSSSVI-----PSSSSSMLSSSSATAISSSSS 62
Query: 327 ISPLSTQDLAS 359
SPLS+ S
Sbjct: 63 SSPLSSSSFTS 73
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 3.8
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 263 DFTNHNGTGGKSIYGNKFEDEN-FTLKHTGPGVLSMANAGADTNGSQFFI 409
D + T KS+YG +D+N F + T V+ ADT Q F+
Sbjct: 11 DLEKYPSTATKSVYGQSKDDKNVFDIHPTESEVIPGEVEYADTPSHQNFL 60
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.8 bits (54), Expect = 3.8
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = -3
Query: 504 PKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVKF 325
P S + +S +++ T+ P+S EV T P+ S+ A + E + G V
Sbjct: 162 PASSTEVASSYSASSTEVTSSYPASSEVATSTSSYVAPVSSSVASSSEISAGSATSYVPT 221
Query: 324 SSSNL 310
SSS++
Sbjct: 222 SSSSI 226
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 5.0
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = -2
Query: 271 GEVPSLQHEIGDDTMENGALVTEAFLASAQGTEVFTRLWSDVTSQLNNNFSQWGIVNSDV 92
GEV ++QH +T+++ T S+ TE+ RL + ++ N +
Sbjct: 878 GEVSAIQHSSAQNTLDDHVNTTTHESPSSAFTEILERL-KAIEQNISTNHTNDSAALKSS 936
Query: 91 EEYS 80
E++S
Sbjct: 937 EDHS 940
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +2
Query: 122 KIVIELRSDVTPKTC-ENFRAL 184
++++ L SD+ PK C NF+AL
Sbjct: 1135 QLMLRLHSDIYPKICISNFKAL 1156
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 25.0 bits (52), Expect = 6.6
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = +2
Query: 215 GSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTN 391
G I H+ +PN M Q + G Y + + E+ + GV+ +++ D N
Sbjct: 67 GQIMHQEVPNSMAQYSFTVKNPGKYMYCFYNDALDGESKEVLFNVHGVIYISDEDLDAN 125
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 8.7
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = +3
Query: 57 IPAKCLYHEYSSTSLLTMPHW 119
+P +C+Y ++T L+ PH+
Sbjct: 128 LPGECIYGHKATTFLINAPHY 148
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 24.6 bits (51), Expect = 8.7
Identities = 8/33 (24%), Positives = 19/33 (57%)
Frame = +2
Query: 377 GADTNGSQFFITTVKTSWLDGRHVVFGNVVEGM 475
G TNG F + + ++W + + + +G+ +E +
Sbjct: 531 GVKTNGRPFGLGIMHSAWQEPQLIKYGSAIEDL 563
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 8.7
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Frame = -2
Query: 475 HAFNNIPKDNMSAIQPGGLDSGDEELGTISISTGISHGEDARSCVLKG------EILVFK 314
H N P + P +S EL + IS+G+DA S VLK E++V +
Sbjct: 228 HELNESPSTPTAPDFPH-YNSSPSELSPTQRRSSISNGKDAPSPVLKDLTSYTQEVIVCR 286
Query: 313 LIAVDGLSPS 284
LSPS
Sbjct: 287 KFLHHSLSPS 296
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 24.6 bits (51), Expect = 8.7
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 202 AFLASAQGTEVFTRLWSDVTSQLNNNFSQ 116
A+ ++ GTE DVT QL NNFSQ
Sbjct: 607 AYDMNSSGTENLDAT-PDVTGQLPNNFSQ 634
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 24.6 bits (51), Expect = 8.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 210 TRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTRISPLSTQDLASSP 365
TR + VSS + K+ T+ ++ PS++ +P+S+ ASSP
Sbjct: 442 TRVQTTTVSSISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSP 493
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 8.7
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 266 FTNHNGTGGKSIYGNKFEDENF-TLKHTGPG--VLSMANAGADTNG 394
F N NG G +S ++ +D N+ T++ G L++ A + T G
Sbjct: 369 FGNENGVGEESEMESEIDDRNYETMEEEADGETPLAIVKASSGTKG 414
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,561
Number of Sequences: 5004
Number of extensions: 53374
Number of successful extensions: 217
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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