Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26c06
(509 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 23 2.4
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 23 2.4
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 22 3.2
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 22 3.2
AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein. 22 3.2
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 22 4.2
AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier... 21 5.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.4
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 21 9.8
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 21 9.8
AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly pro... 21 9.8
AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase pro... 21 9.8
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 22.6 bits (46), Expect = 2.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 58 ISNVSNLQNHHNDNASL 8
ISN+SN N++N N L
Sbjct: 90 ISNISNYNNNNNYNKKL 106
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 22.6 bits (46), Expect = 2.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 58 ISNVSNLQNHHNDNASL 8
ISN+SN N++N N L
Sbjct: 328 ISNISNYNNNNNYNKKL 344
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 22.2 bits (45), Expect = 3.2
Identities = 6/15 (40%), Positives = 13/15 (86%)
Frame = +2
Query: 200 GFGYKGSIFHRVIPN 244
GFGY+ ++ ++V+P+
Sbjct: 389 GFGYESNVKYQVVPS 403
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 22.2 bits (45), Expect = 3.2
Identities = 6/15 (40%), Positives = 13/15 (86%)
Frame = +2
Query: 200 GFGYKGSIFHRVIPN 244
GFGY+ ++ ++V+P+
Sbjct: 389 GFGYESNVKYQVVPS 403
>AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein.
Length = 226
Score = 22.2 bits (45), Expect = 3.2
Identities = 6/15 (40%), Positives = 13/15 (86%)
Frame = +2
Query: 200 GFGYKGSIFHRVIPN 244
GFGY+ ++ ++V+P+
Sbjct: 15 GFGYESNVKYQVVPS 29
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 21.8 bits (44), Expect = 4.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 58 ISNVSNLQNHHNDNASL 8
ISN+SN N +N N L
Sbjct: 90 ISNISNYNNDNNYNKKL 106
>AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier
protein JHBP-1 protein.
Length = 253
Score = 21.4 bits (43), Expect = 5.6
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -2
Query: 340 LKGEILVFKLIAVDGLSPSAVMVGE 266
L G + FK++ ++ L+ +V +GE
Sbjct: 55 LAGGLKSFKILPIEPLAVDSVKIGE 79
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.4
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +1
Query: 373 CRC*Y*WFPVLHHHCQDLLAGW 438
C+ WFP HC W
Sbjct: 111 CKMDVAWFPFDDQHCDMKFGSW 132
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.4
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +1
Query: 373 CRC*Y*WFPVLHHHCQDLLAGW 438
C+ WFP HC W
Sbjct: 111 CKIDIAWFPFDDQHCDMKFGSW 132
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.4
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +1
Query: 373 CRC*Y*WFPVLHHHCQDLLAGW 438
C+ WFP HC W
Sbjct: 111 CKIDITWFPFDDQHCDMKFGSW 132
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.4
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +1
Query: 373 CRC*Y*WFPVLHHHCQDLLAGW 438
C+ WFP HC W
Sbjct: 111 CKIDIAWFPFDDQHCDMKFGSW 132
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.4
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +1
Query: 373 CRC*Y*WFPVLHHHCQDLLAGW 438
C+ WFP HC W
Sbjct: 111 CKMDIAWFPFDDQHCDMKFGSW 132
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.4
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +1
Query: 373 CRC*Y*WFPVLHHHCQDLLAGW 438
C+ WFP HC W
Sbjct: 111 CKIDITWFPFDDQHCDMKFGSW 132
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 7.4
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +1
Query: 373 CRC*Y*WFPVLHHHCQDLLAGW 438
C+ WFP HC W
Sbjct: 179 CKIDITWFPFDDQHCDMKFGSW 200
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 7.4
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +1
Query: 373 CRC*Y*WFPVLHHHCQDLLAGW 438
C+ WFP HC W
Sbjct: 179 CKIDITWFPFDDQHCDMKFGSW 200
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 20.6 bits (41), Expect = 9.8
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -2
Query: 124 FSQWGIVNSDVEEYSW*RHFAGISNVSNLQNHHNDNAS 11
+S W I+ + R A NV++L++ N N S
Sbjct: 234 YSYWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTS 271
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 20.6 bits (41), Expect = 9.8
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -2
Query: 124 FSQWGIVNSDVEEYSW*RHFAGISNVSNLQNHHNDNAS 11
+S W I+ + R A NV++L++ N N S
Sbjct: 110 YSYWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTS 147
>AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly
protein MRJP2 protein.
Length = 452
Score = 20.6 bits (41), Expect = 9.8
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -2
Query: 163 RLWSDVTSQLNNNFSQWGIVNSDVEEYSW*RHFAGISNVSNLQNHHNDN 17
R+ V N + + I+ ++V+E H + N+QN +N N
Sbjct: 382 RMQKIVNDDFNFDDVNFRILGANVKELIRNTHCVNNNQNDNIQNTNNQN 430
>AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase
protein.
Length = 580
Score = 20.6 bits (41), Expect = 9.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -2
Query: 280 VMVGEVPSLQHEIGDDTM 227
V+ G V S++ E+G+DT+
Sbjct: 490 VIDGRVLSVKRELGNDTV 507
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,693
Number of Sequences: 438
Number of extensions: 3535
Number of successful extensions: 20
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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