Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26c02
         (589 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   1.4  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   4.4  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   7.7  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   7.7  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 183 IIINEVIVTSKVLYYLTILVKEDPENTENIEQNQSTRLVPL 305
           +I+N V V  K +  L I + E  ENT   E+     ++ L
Sbjct: 93  LIVNAVFVKEKRIRTLLIKLSEIKENTRLAEKQARISILEL 133


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -2

Query: 351 HKSFPTPPNWALFSKKEAPVG 289
           H   PTPP   LF     P+G
Sbjct: 416 HYVTPTPPEAPLFQNVLPPIG 436


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 327 LAVLEKIYADVQDL 368
           L VLE IY+D+ DL
Sbjct: 346 LQVLEDIYSDLLDL 359


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +3

Query: 63  RKWLNSKKTVLIIPNVGIRSTQNYP 137
           R W +S + VL   N       NYP
Sbjct: 233 RSWCSSSQPVLSTTNSTTNCYNNYP 257


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,996
Number of Sequences: 336
Number of extensions: 2612
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)