Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26c02
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual     29   0.38 
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   2.0  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    27   2.7  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   3.5  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    25   6.2  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   8.2  

>SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +3

Query: 84  KTVLIIPNVGIRSTQN--YPTRNLHTFVSWDRIEDIIINEVIVTSKVLYYLTILVKEDPE 257
           +++ +I ++G+++  +   P ++    +  D I DI INE      V YY+ I ++ + E
Sbjct: 71  ESLFVIRDLGVQTNCHSIVPWKSSSKLIPLDSIRDIFINEGFRKFDVCYYMGIAIESETE 130


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 353 CINLFQHR--QTGPCSQKKRHQSG*LILFNVFSILGIFF 243
           CIN + H    TG C   + H++  L +F + +++ I+F
Sbjct: 422 CINRYDHHCPWTGNCVGARNHRTFLLFVFTLSTLIPIYF 460


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 14/163 (8%)
 Frame = +3

Query: 72  LNSKKTVLIIPNVGIRSTQNYPTRNLHT--FVSWDRIEDI----IINEVIVTSKVLYYLT 233
           L+    + + PNV  +S   +  R++H    V   ++EDI     +N  ++ S++    T
Sbjct: 13  LSDDSDIEVHPNVDKKSFIRWRQRDIHEKRAVRKQKMEDIKGAMAMNRRLL-SRISEMET 71

Query: 234 ILVKEDPENT-----ENIEQNQSTRL---VPLFLRTRPSLAVLEKIYADVQDLLTEAKQQ 389
           +L KE P +        +E  +S  +   +P  +     L  L K+  D +D  TE K  
Sbjct: 72  VLEKESPSDPYVLLGSFLEAKKSEDMDSAIPGGMSYHHMLMSLLKVIKDAEDT-TEEKSM 130

Query: 390 V*PDS*VIILKYYSNWY*ISVKLLHNFSEFFDSLSYASRNVVT 518
              D  +  LK +       +KLL +  + +D+L   S+N +T
Sbjct: 131 DDSDKCLRRLKSHKERL---LKLLEDAQKEYDTLEAESKNYIT 170


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 315  FSKKEAPVGLIDFVQCFQYSRDL 247
            ++KKE  VG+IDF++ + + + L
Sbjct: 1858 YTKKELYVGIIDFIRTYTWDKKL 1880


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 366 SLVHLHKS-FPTPPNWALFSKKEAP 295
           SLV+  +S  P+  NW ++SKK+ P
Sbjct: 335 SLVNYSRSSLPSAENWNVYSKKDIP 359


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 243 KEDPENTENIEQNQSTRLVPLFLRTRPSLAVLEKIYADVQ 362
           K+D E++EN +Q     L P  L  + SL V     +D Q
Sbjct: 535 KDDEEDSENRKQADKVELSPSSLLRQMSLPVDSSSQSDAQ 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,759
Number of Sequences: 5004
Number of extensions: 43996
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)