Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26c02
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83108-3|CAB05511.1|  457|Caenorhabditis elegans Hypothetical pr...    31   0.80 
U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical p...    29   1.9  
AC006624-3|AAF39786.2|  301|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF016679-3|AAB66160.1|  578|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF016679-2|AAB66159.1|  658|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF016679-1|AAB66162.1|  539|Caenorhabditis elegans Hypothetical ...    28   5.7  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   7.5  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   7.5  
AF025472-3|AAB71075.2|  843|Caenorhabditis elegans Hypothetical ...    27   7.5  

>Z83108-3|CAB05511.1|  457|Caenorhabditis elegans Hypothetical
           protein F44E5.3 protein.
          Length = 457

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 22/61 (36%), Positives = 32/61 (52%)
 Frame = +3

Query: 195 EVIVTSKVLYYLTILVKEDPENTENIEQNQSTRLVPLFLRTRPSLAVLEKIYADVQDLLT 374
           E +  S   Y LT + K  PE  E I +N +   + L L+    L  LE++YA V+D L+
Sbjct: 40  ESMSNSIASYALTNVHKGTPEVREEIPKNLNISKMNLVLK---DLQALERLYAIVEDPLS 96

Query: 375 E 377
           E
Sbjct: 97  E 97


>U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical
           protein F18A1.1 protein.
          Length = 1075

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 141 RNLHTF-VSWDRIEDIIINEVIVTSKVLYYLTILVKEDPENTENIEQNQSTRLVPLFLR 314
           RN   F V+WD I  I  N +  + K+L  LT+L  + PEN +++  ++  R   L L+
Sbjct: 67  RNNREFTVNWDNIWSIR-NFITRSGKILKKLTLLNFKSPENVKDVWHHRLVRGAKLDLK 124


>AC006624-3|AAF39786.2|  301|Caenorhabditis elegans Hypothetical
           protein C53D5.4 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 252 PENTENIEQNQSTRLVPLFLRTRPSLAV-LEKIYADVQDLLTEAKQQV 392
           P+N  N+  NQ T LV  FLR +  LAV +EK+  + ++L    K+++
Sbjct: 39  PDNLSNV--NQLTCLVKQFLREQQDLAVKVEKVQENQKNLSDFVKEKL 84


>AF016679-3|AAB66160.1|  578|Caenorhabditis elegans Hypothetical
           protein T28C12.4b protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 111 GIRSTQNYPTRNLHTFVSWDR 173
           GIR    YP R++H  + WD+
Sbjct: 67  GIRKCNKYPNRSIHKEMPWDK 87


>AF016679-2|AAB66159.1|  658|Caenorhabditis elegans Hypothetical
           protein T28C12.4a protein.
          Length = 658

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 111 GIRSTQNYPTRNLHTFVSWDR 173
           GIR    YP R++H  + WD+
Sbjct: 147 GIRKCNKYPNRSIHKEMPWDK 167


>AF016679-1|AAB66162.1|  539|Caenorhabditis elegans Hypothetical
           protein T28C12.5 protein.
          Length = 539

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 111 GIRSTQNYPTRNLHTFVSWDR 173
           GIR    YP R++H  + WD+
Sbjct: 67  GIRKCNKYPNRSIHKEMPWDK 87


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +3

Query: 231   TILVKEDPENTENIEQNQSTRLVPLFLRTRPSLAVLEKIYADVQDLLTEAKQQV*PD 401
             T L+++D   T + E++++  LV L  + + SLA+  K  +      +E+ + V PD
Sbjct: 11217 TTLLEDDLAKTTSAEESEAEHLVALQNKEKTSLAMRRKRVSFDSSTKSESIEDVIPD 11273


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +3

Query: 231   TILVKEDPENTENIEQNQSTRLVPLFLRTRPSLAVLEKIYADVQDLLTEAKQQV*PD 401
             T L+++D   T + E++++  LV L  + + SLA+  K  +      +E+ + V PD
Sbjct: 11217 TTLLEDDLAKTTSAEESEAEHLVALQNKEKTSLAMRRKRVSFDSSTKSESIEDVIPD 11273


>AF025472-3|AAB71075.2|  843|Caenorhabditis elegans Hypothetical
           protein ZK250.6 protein.
          Length = 843

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +3

Query: 141 RNLHTFVSWDRIE-DIIINE-VIVTSKV-LYYLTILVKEDPENTENIEQNQSTRLV 299
           R  H F+SW+ +E D +I++  I+ + V +  +T +    P+N +    N+S R V
Sbjct: 658 RGWHKFISWEELESDYVIDDSTIIEAHVKIIKVTNITCIAPKNLKTFMLNRSVRNV 713


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,395,863
Number of Sequences: 27780
Number of extensions: 238911
Number of successful extensions: 593
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)