Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26b23
         (627 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24246 Cluster: Dynein intermediate chain, cytosolic; n...    52   1e-05
UniRef50_Q5LLX9 Cluster: Sugar ABC transporter, permease protein...    34   2.4  
UniRef50_A4SQ01 Cluster: Pentapeptide repeat; n=1; Aeromonas sal...    33   5.6  
UniRef50_O67724 Cluster: N-acetyl-gamma-glutamyl-phosphate reduc...    33   7.4  
UniRef50_Q0ETJ0 Cluster: Spore germination protein; n=2; Thermoa...    32   9.8  
UniRef50_Q5BW91 Cluster: SJCHGC01441 protein; n=1; Schistosoma j...    32   9.8  

>UniRef50_Q24246 Cluster: Dynein intermediate chain, cytosolic;
           n=55; Eumetazoa|Rep: Dynein intermediate chain,
           cytosolic - Drosophila melanogaster (Fruit fly)
          Length = 663

 Score = 52.0 bits (119), Expect = 1e-05
 Identities = 37/95 (38%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
 Frame = +1

Query: 316 DRKAELERKKAKLXXXXXXXXXXXXXXXXXXXXXXLQRASATSSLDS--RRDIDEMLSSL 489
           DRKAELERKKAKL                        R    + +D   R+D+DEMLSSL
Sbjct: 2   DRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQRKDLDEMLSSL 61

Query: 490 GVAPVKDVXXXXXXXXXXXP--PQTASPDASLPHT 588
           GVAPV +V                T +PDASL  T
Sbjct: 62  GVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQAT 96


>UniRef50_Q5LLX9 Cluster: Sugar ABC transporter, permease protein;
           n=2; Rhodobacteraceae|Rep: Sugar ABC transporter,
           permease protein - Silicibacter pomeroyi
          Length = 285

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 442 MWPMPVAVLLQHLSVLFLCGADLYPLLW 359
           M P P A+ L++L VL  C   LYPLLW
Sbjct: 1   MKPSPGALALKYLFVLLACAVVLYPLLW 28


>UniRef50_A4SQ01 Cluster: Pentapeptide repeat; n=1; Aeromonas
           salmonicida subsp. salmonicida A449|Rep: Pentapeptide
           repeat - Aeromonas salmonicida (strain A449)
          Length = 282

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 589 LYAVNWHLERLSEVETVKSLMIKKRGHP*LEPLQAR 482
           L  + WH  RL  + T K LM ++RG    +P QAR
Sbjct: 123 LLGIRWHNTRLDNLNTGKRLMQERRGRSERDPAQAR 158


>UniRef50_O67724 Cluster: N-acetyl-gamma-glutamyl-phosphate
           reductase; n=1; Aquifex aeolicus|Rep:
           N-acetyl-gamma-glutamyl-phosphate reductase - Aquifex
           aeolicus
          Length = 340

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 101 LISKGTASKKHRIYEPF-AKIFVSELEFIEHPVTHHLFATFC 223
           LIS+    KK R   PF +  ++SE+EF+E PV  +  A  C
Sbjct: 35  LISQSYKGKKVREVLPFFSNTYISEIEFLEEPVEDYELAFLC 76


>UniRef50_Q0ETJ0 Cluster: Spore germination protein; n=2;
           Thermoanaerobacter ethanolicus|Rep: Spore germination
           protein - Thermoanaerobacter ethanolicus X514
          Length = 361

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -3

Query: 142 INSVFFRSCSFTYQ*FRIIVE*ISINQYKNIVDPIDSVVFYSFFIVS 2
           I  VFF+   FTY    +I   + +  YK ++ P+ S++F + FI++
Sbjct: 273 IIGVFFKISVFTYAGLTMIKNALELKSYKYLLFPVLSMIFAASFIIA 319


>UniRef50_Q5BW91 Cluster: SJCHGC01441 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC01441 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 229

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 14/17 (82%), Positives = 17/17 (100%)
 Frame = +1

Query: 304 LSMSDRKAELERKKAKL 354
           ++M+DRKAELERKKAKL
Sbjct: 4   VAMADRKAELERKKAKL 20


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 520,856,363
Number of Sequences: 1657284
Number of extensions: 9206198
Number of successful extensions: 20221
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20217
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)