Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26b23
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    27   1.7  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   2.2  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   2.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   3.9  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   3.9  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   5.1  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    25   6.8  
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac...    25   9.0  

>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 598 WLYLYAVNWHLERLSEVETVKS 533
           W ++Y  +WH+ER  +V +V+S
Sbjct: 521 WDFIYETSWHIERWLKVFSVQS 542


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 283 NTAKISTSESY**LYRIKMPTERGKQMMSNGMFNEF*FRNEDLSERF 143
           NT  I   + Y   +R+  PT R +Q +  G    F   +EDL E F
Sbjct: 309 NTMFIDKQDIY---HRLSTPTSRKRQTLEKGHIKAFSAVDEDLDEIF 352


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 89   NCRINFNKSIQEHCRSD 39
            +CR  F K+IQ+HC +D
Sbjct: 1776 DCRSKFVKTIQQHCSAD 1792


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 234  ILYNY*YDSDVDILAVFIKSYQDVEH 311
            IL NY Y+ D   L +FIK +Q   H
Sbjct: 939  ILMNYDYERDEVYLMIFIKIFQKCVH 964


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -2

Query: 131 VF*KLFLYLSVIPDNCRINFNKSIQEHCRSD*LSCFLLFFYCI 3
           +F  + + L+++P      F+ + Q+H RS  +  ++ FF+ I
Sbjct: 505 IFVSILIALNIVPAAFIFGFSNATQQHYRSREIVGYVHFFFSI 547


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 357 RHKRG*RSAPQRKRTERC*RSTATGIGHI*PGQSS*H 467
           R  RG  SAP+R++     ++TAT I H    +SS H
Sbjct: 221 RSSRGRSSAPKRRKDSGSSKTTATYIPHNPSKKSSQH 257


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 421 VLLQHLSVLFLCGADLYPLLWRGAS 347
           +++QHLS++F C  D  PL  + AS
Sbjct: 285 LIVQHLSLVFRCSDDPMPLYEKLAS 309


>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 191 PVTHHLFATFCRHFY 235
           P+ H + +T C HFY
Sbjct: 185 PIVHPILSTACNHFY 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,760
Number of Sequences: 5004
Number of extensions: 39740
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)