Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26b22
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    28   1.1  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   2.0  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   3.5  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    26   6.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   6.1  

>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 329 TNTDLPRIQYSLLLKHQGLSIINKHCIFHRTLHNHDL 219
           TN  + R+ Y  L   Q ++++NKH    +   NHDL
Sbjct: 741 TNVPIIRLAYRALTLTQEIALVNKHVQPSKHPSNHDL 777


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 511  FSHYVYNSEHSTDNETKHSFISNKNFISNV 422
            F  ++ + EH+  +E+KH   S KNF+ +V
Sbjct: 1067 FLIWLQHMEHNIHDESKHYLKSEKNFLQSV 1096


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +1

Query: 490 YCTHNAKNQNNLLLIEKNHINLLSLSYIF*PPIISSFLKVSQFHSTFEYCFYHSNDYRIN 669
           YC  N      LLL + + INL+   Y+    ++ S  +     S FE     +NDY + 
Sbjct: 468 YCVSNLSIFPKLLLEKTSVINLIMALYV---KLLKSLARDFPARSPFEATSQKTNDYELE 524

Query: 670 L 672
           +
Sbjct: 525 V 525


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -2

Query: 507 RIMCTIVSIRQITKLSIRLFQTRILYRMFANTSSDPIRLLELKQYSSHQV 358
           +I+C +  I + T +  +  +  +L R+F  +SS P  +L +K+Y    V
Sbjct: 16  QILCELSQIDEST-MDPQYTEDDVLARLFVFSSSSPQTVLNVKKYEDVSV 64


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 331  IQTPTYPEFSIVYYSNTKDFQ*LINIVSSTVHFTITILVSN 209
            +  P+     ++Y+SN ++   L+++ SS  H+T   L  N
Sbjct: 2223 LHLPSNELIPMMYFSNPQEIALLLSLPSSNNHWTSPFLAQN 2263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,680
Number of Sequences: 5004
Number of extensions: 55808
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)