Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26b22
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1121 - 31041629-31041793,31041891-31042022,31042255-310424...    30   2.1  
04_04_1323 + 32644956-32645096,32645488-32646126,32646701-326469...    29   2.7  
06_01_0270 - 2001569-2001589,2001852-2001980,2002966-2003055,200...    29   3.6  
04_04_0360 - 24684159-24684565,24684654-24685089                       28   8.4  

>04_04_1121 -
           31041629-31041793,31041891-31042022,31042255-31042425,
           31042521-31042622,31042703-31042807,31043115-31043286,
           31043916-31043980,31044179-31044502,31044729-31044846,
           31044928-31045011,31045472-31045603,31045714-31046570,
           31046735-31046849,31047371-31047481,31047763-31047824
          Length = 904

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -1

Query: 424 VRKHFVRSDKITRAQTIQQSPGKNNRVNFCYIQTPTYPEFSIVYYSNT 281
           +R+ F R  ++T A+ I+   GK+ +  F   +T    E ++ Y++NT
Sbjct: 39  LREVFSRKGEVTDAKVIRTKDGKSRQFAFVGFRTNEEAEEALKYFNNT 86


>04_04_1323 +
           32644956-32645096,32645488-32646126,32646701-32646907,
           32647020-32647100,32647686-32648566,32648641-32648932,
           32649657-32650673,32651334-32651605,32651992-32652493
          Length = 1343

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = -1

Query: 439 NFISNVRKHFVRSDKITRAQTIQQSPGKNNRVNFCYIQTPTYPEFSIVYYSNTKDFQ*LI 260
           +F+S +R+  +    I  A     S GK   ++F Y   P +  F  +  S+ KD   +I
Sbjct: 380 SFLSPIRRRRIYIKLIDSANNEDASGGKIISISFLYANMPIWLMFFALGISSDKDIFDVI 439

Query: 259 NI--VSSTVHFTITILVSNSTD 200
           N+    + V  TIT  +  S +
Sbjct: 440 NMEDCDACVINTITATIKESDE 461


>06_01_0270 -
           2001569-2001589,2001852-2001980,2002966-2003055,
           2003361-2003466,2003985-2004064,2005895-2005977,
           2006057-2006126,2006208-2006291,2006445-2006540,
           2007555-2007635,2007844-2007999
          Length = 331

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 343 NFCYIQTPTYPEFSIVYYSNTKDFQ*LI 260
           N CY++  TY    IV Y+N +DF  L+
Sbjct: 126 NSCYVKRGTYELKKIVEYANNRDFTSLV 153


>04_04_0360 - 24684159-24684565,24684654-24685089
          Length = 280

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 688 CFILLIN*FYNHYCDKNNTQMYCE 617
           C+I  IN     YCDKNN Q  C+
Sbjct: 148 CYINEINGASMDYCDKNNKQWPCQ 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,434,533
Number of Sequences: 37544
Number of extensions: 270414
Number of successful extensions: 485
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)