Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26b22
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72514-3|CAA96673.1|  741|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinas...    27   9.9  
AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical ...    27   9.9  
AC006833-7|AAF60945.1|  289|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z72514-3|CAA96673.1|  741|Caenorhabditis elegans Hypothetical
           protein T10B10.3 protein.
          Length = 741

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 538 FLLTINYFGFSHYVYNSEHSTDNETKHSFISN 443
           F+L  N  GFSHYV++ E   D++T  +++ +
Sbjct: 409 FMLEANEEGFSHYVHSEE--KDDQTVFAYVGS 438


>Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical
           protein T10G3.2 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 502 NAKNQNNLLLIEKNHINLLSLSYIF*PPIISSFLKVSQFHSTFEYCFY 645
           N  ++   LL   + + L+ LS +F    ++ + K   FH  F +CF+
Sbjct: 12  NCGSERLFLLSIASSVALVPLSSLFFSASVAFYRKRKIFHPMFSFCFF 59


>AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinase
           protein 34 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 445 NKNFISNVRKHFVRSDKITRAQTIQQSPGKNNRVNFCYI 329
           ++ +I  +RK     + +T  + + Q  GK +   FCY+
Sbjct: 63  DREYIDAIRKEITIQESLTGHENVIQVLGKESDAQFCYM 101


>AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical
           protein M04G7.2 protein.
          Length = 550

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 445 NKNFISNVRKHFVRSDKITRAQTIQQSPGKNNRVNF 338
           NKN    +  +++RS  + R   + Q P K  R +F
Sbjct: 315 NKNSTDYIHANYIRSPFLKRGYILTQGPKKETRADF 350


>AC006833-7|AAF60945.1|  289|Caenorhabditis elegans Hypothetical
           protein ZK616.7 protein.
          Length = 289

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 445 NKNFISNVRKHFVRSDKITRAQTIQQSPGKNNRVNF 338
           NKN    +  +++RS  + R   + Q P K  R +F
Sbjct: 54  NKNSTDYIHANYIRSPFLKRGYILTQGPKKETRADF 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,039,266
Number of Sequences: 27780
Number of extensions: 300652
Number of successful extensions: 690
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)