Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26b22
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 266  INKHCIFHRT 237
            +NKHC  HRT
Sbjct: 1683 VNKHCTIHRT 1692


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -1

Query: 502 YVYNSEHSTDNETKHSFISNKNFISNVRK 416
           Y YN++++ +N   +  +  KN+I N+ +
Sbjct: 98  YNYNNKYNYNNNNYNKKLYYKNYIINIEQ 126


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 107 ASFLPVACWLLSLGKENSQFERSFTFGNEHLSPTT 3
           A    VAC    L  +++  E + + G+E LS  T
Sbjct: 659 ADTFAVACETFCLDDDDTLLEVALSLGSEALSAAT 693


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,277
Number of Sequences: 438
Number of extensions: 4201
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)