Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26b20
         (293 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    23   7.1  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    23   9.3  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    23   9.3  

>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 288 FLVFAIIQWIISSLFHII 235
           FL+   + W+IS  FH+I
Sbjct: 198 FLISYFVYWVISFPFHLI 215


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 264 WIISSLFHIIHIYIDKS 214
           WI SSLF+I+  YI K+
Sbjct: 266 WIPSSLFNIVQGYILKN 282


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 218 NLHYEHHTHIVTNNKKKNRRI 156
           ++H   + H+ T NK+ NRR+
Sbjct: 725 DIHAYDNDHVSTKNKEFNRRL 745


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 935,763
Number of Sequences: 5004
Number of extensions: 13008
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)