Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26b20
         (293 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021491-4|CAA16374.2|  324|Caenorhabditis elegans Hypothetical ...    27   1.8  
U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine rece...    26   5.4  
Z81527-4|CAB04274.2|  388|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AL021491-4|CAA16374.2|  324|Caenorhabditis elegans Hypothetical
           protein Y44A6B.2 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -3

Query: 291 FFLVFAIIQW---IISSL-FHIIHIYIDKSTL*TSYAY 190
           FFLVF  I     + ++L FH+I+  +DKS   T Y Y
Sbjct: 4   FFLVFGFINLTSLLFNALVFHVIYKQVDKSKFPTIYIY 41


>U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine
           receptor, class sx protein15 protein.
          Length = 332

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 288 FLVFAIIQWIISSLFHIIHI 229
           F+VF  I  II +L HIIH+
Sbjct: 225 FVVFRFITSIILNLLHIIHV 244


>Z81527-4|CAB04274.2|  388|Caenorhabditis elegans Hypothetical
           protein F35E12.4 protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 254 VVYSTSFTFTLINLH-YEHHTHIVTNN 177
           +VYSTS T TL+NL+     +  VTN+
Sbjct: 197 LVYSTSTTLTLLNLYGTPSESFFVTND 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,999,781
Number of Sequences: 27780
Number of extensions: 68858
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)