Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26b20
         (293 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   7.3  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    19   9.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           19   9.6  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 254 VVYSTSFTFTLINLHYEHHTHIV 186
           V++S   T T +   Y HHT+I+
Sbjct: 24  VLFSFLRTRTKLQPTYFHHTYII 46


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 254 VVYSTSFTFTLINLHYEHHTHIV 186
           V++S   T T +   Y HHT+I+
Sbjct: 24  VLFSFLRTRTKLQPTYFHHTYII 46


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 280 IRNYPMDNQ 254
           +RN+PMD Q
Sbjct: 166 LRNFPMDRQ 174


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -1

Query: 287 FWYSQLSNG*SVVYSTSFTFTLINLHYEHHTHIVTNNK 174
           FW S ++NG   V S  +     N    H+ HI    K
Sbjct: 495 FWVSFVNNGVPNVNSVQWPRLNPNEKSLHYLHIAGPGK 532


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -1

Query: 287 FWYSQLSNG*SVVYSTSFTFTLINLHYEHHTHIVTNNK 174
           FW S ++NG   V S  +     N    H+ HI    K
Sbjct: 495 FWVSFVNNGVPNVNSVQWPRLNPNEKSLHYLHIAGPGK 532


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,702
Number of Sequences: 438
Number of extensions: 1305
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)