Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26b19
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   3.0  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   3.0  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    25   3.9  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    25   3.9  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    24   6.9  
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|...    24   9.1  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    24   9.1  
SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces...    24   9.1  

>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 377 SRNIHGLAPYVLGHCVWI 324
           SR+IH  +P+ LG  +W+
Sbjct: 360 SRDIHNSSPFKLGDSIWL 377


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 222  VYISTPWWSW 251
            V+I  PWWSW
Sbjct: 1055 VFIMDPWWSW 1064


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 320 GISTHSVPTHMVPDHE 367
           GI+TH VP HM P  E
Sbjct: 231 GIATHFVPKHMFPHLE 246


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 233 HSVVVMATLIQENGIKELSKGTHGVVANHGIS 328
           H++ V+A +   NG++++  GT+G ++    S
Sbjct: 65  HAIQVIAAIAAGNGVEKIIVGTNGYLSTPAAS 96


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 200 NNCEKYISLYQHSVVVMATLIQEN 271
           NN EK+ SL+ HS + M  L+ ++
Sbjct: 773 NNVEKWPSLFSHSFLSMFLLLLDS 796


>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 200 FYTRNEVIIFIAKQLGPFNCATSL 129
           F   + ++IFIA+ + P +C+T L
Sbjct: 202 FMAVSSILIFIAETVEPGSCSTDL 225


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 344 LGHCVWICHGLPLPRGC 294
           + H  W  HG+P P  C
Sbjct: 83  ISHTRWATHGIPSPINC 99


>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 114 DHTTSVNIKETSYLQLFTEKNQKLFHILSS 25
           D TT++  K   YL+   + N ++ H+L S
Sbjct: 45  DRTTAIGKKIDDYLKESVQLNDQVIHLLFS 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,715,679
Number of Sequences: 5004
Number of extensions: 33029
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)