Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26b19
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0328 + 24441747-24442073,24442205-24442327,24442947-244430...    31   0.23 
02_01_0097 + 712586-713035,714120-715080,715577-715746                 30   0.53 
01_01_0349 + 2776093-2776566,2778211-2778729,2778813-2779048,277...    28   2.8  
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260...    28   2.8  
11_06_0259 - 21757190-21758467                                         27   6.5  
05_03_0629 + 16376575-16376689,16376792-16376839,16376927-163770...    26   8.6  

>04_04_0328 +
           24441747-24442073,24442205-24442327,24442947-24443012,
           24443155-24443223,24443263-24443307
          Length = 209

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 260 IQENGIKELSKGTHGVVANHGISTHSVPTH 349
           I E+GI +L+   HG   +HG S  +V TH
Sbjct: 30  ISEDGIPDLTDSIHGAAHHHGRSEENVSTH 59


>02_01_0097 + 712586-713035,714120-715080,715577-715746
          Length = 526

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +1

Query: 220 QFISALRGGHGDAHPREWY*RAEQGHPRGSGKPWHIHTQCPNTYG 354
           +FI   +GG GD   + W  R   G P   G+    H   P   G
Sbjct: 464 KFIPGPKGGGGDGRGKGWRKRRTGGRPAAGGRGCGAHAAAPRVGG 508


>01_01_0349 +
           2776093-2776566,2778211-2778729,2778813-2779048,
           2779135-2779410,2779447-2779549,2780058-2780330
          Length = 626

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 230 QHSVVVMATLIQENGIKELSKGTHGVVANHGISTHSVPTHMVPDH 364
           +++V +  T+    G   LS  T G+V N+ +   SVP    PDH
Sbjct: 429 RNAVAMTTTVNSYFGAHVLSPST-GIVLNNEMDDFSVPAERTPDH 472


>01_01_0323 +
           2598850-2598924,2599756-2600844,2601352-2602589,
           2602637-2602810,2603032-2603098,2603735-2603757,
           2603899-2604001,2604087-2604848,2605098-2605292,
           2605496-2606115,2606429-2606480,2606558-2607197,
           2608366-2608574,2608660-2609189,2609500-2609566,
           2609651-2609728,2610415-2610483,2610569-2610643
          Length = 2021

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 356 APYVLGHCVWICHG 315
           AP+VLGH + +CHG
Sbjct: 460 APFVLGHYLGVCHG 473


>11_06_0259 - 21757190-21758467
          Length = 425

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 96  NIKETSYLQLFTEKNQKLFHILS 28
           N+ ET Y   F  KN +LF++L+
Sbjct: 220 NLPETGYRYAFYNKNDRLFYLLN 242


>05_03_0629 +
           16376575-16376689,16376792-16376839,16376927-16377012,
           16377791-16377878,16378387-16378472,16378604-16378690,
           16379111-16379293,16379387-16379470,16379590-16379651,
           16379752-16379827,16379906-16379968,16380060-16380141,
           16380840-16380916,16381502-16381549,16381681-16381743
          Length = 415

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
 Frame = -1

Query: 378 VSQYSWSGTICVGTLCVDMPWFA-------TTPWVPLLSSLIPFSWMSVAM 247
           + Q  W G   +G   + +PW+A        TP + +L+SL   + + +A+
Sbjct: 260 LKQNGWIGNFALGASYIGLPWWAGQALFGTLTPDIVVLTSLYSIAGLGIAI 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,064,528
Number of Sequences: 37544
Number of extensions: 212123
Number of successful extensions: 540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)