Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26b19
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34533-9|CAA84303.2|  368|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z30973-5|CAA83224.2|  368|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U67949-5|AAB07566.1|  705|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z73104-2|CAA97434.1|  479|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z69717-3|CAA93534.1|  617|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AL009170-1|CAA15637.1|  617|Caenorhabditis elegans Hypothetical ...    27   4.5  
AL161712-10|CAC35900.1|  533|Caenorhabditis elegans Hypothetical...    27   5.9  

>Z34533-9|CAA84303.2|  368|Caenorhabditis elegans Hypothetical
           protein B0285.10 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 138 NFFVSILNDHTTSVNIKETSYLQLFTEKNQKLFHILSSTA 19
           +F +  L D   +VN  E +  ++   ++  +FH+ SST+
Sbjct: 24  DFGIDFLGDEWKNVNRSEVTVTRILGGQSNHMFHVTSSTS 63


>Z30973-5|CAA83224.2|  368|Caenorhabditis elegans Hypothetical
           protein B0285.10 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 138 NFFVSILNDHTTSVNIKETSYLQLFTEKNQKLFHILSSTA 19
           +F +  L D   +VN  E +  ++   ++  +FH+ SST+
Sbjct: 24  DFGIDFLGDEWKNVNRSEVTVTRILGGQSNHMFHVTSSTS 63


>U67949-5|AAB07566.1|  705|Caenorhabditis elegans Hypothetical
           protein F55A4.5 protein.
          Length = 705

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 209 EKYISLYQHSVVVMATLIQENGIKELSKGTHGVVANHGISTH 334
           +K   LY H +  ++ LIQ    K     T  +VA HG+S +
Sbjct: 402 KKMDPLYGHQINPVSRLIQVTQAKSKEHPTFELVAEHGVSKY 443


>Z73104-2|CAA97434.1|  479|Caenorhabditis elegans Hypothetical
           protein K08D8.3 protein.
          Length = 479

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 132 FVSILNDHTTSVNIKETSYLQLFTEKNQKLFHILSSTAMF 13
           F    N H T+ N + T  L  FT +NQ  + +L  +A++
Sbjct: 151 FAMAPNTHLTTFNAETTVGLVAFTLRNQSHYPLLRQSAVY 190


>Z69717-3|CAA93534.1|  617|Caenorhabditis elegans Hypothetical
           protein H19J13.1 protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 159 LFCNENYNFVSSVKIIVRNISVYISTPWWSWRR 257
           +FCN      SS KI+   +   IS   W+W R
Sbjct: 209 IFCNSKITVNSSRKIVAFGMMHLISVNLWTWFR 241


>AL009170-1|CAA15637.1|  617|Caenorhabditis elegans Hypothetical
           protein H19J13.1 protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 159 LFCNENYNFVSSVKIIVRNISVYISTPWWSWRR 257
           +FCN      SS KI+   +   IS   W+W R
Sbjct: 209 IFCNSKITVNSSRKIVAFGMMHLISVNLWTWFR 241


>AL161712-10|CAC35900.1|  533|Caenorhabditis elegans Hypothetical
           protein Y66D12A.13 protein.
          Length = 533

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +2

Query: 215 YISLYQHSVVVMATLIQENGIKELSKGTHGVVANHGISTHSV 340
           +I LY H  + + T++    +  +S  T+G++ N+ + T S+
Sbjct: 308 FIHLYIHPKITVQTVVASISMFSVSYVTYGLLFNYDVLTGSI 349


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,627,552
Number of Sequences: 27780
Number of extensions: 193052
Number of successful extensions: 456
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)