Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26b19
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   2.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   2.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   3.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   3.6  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 311 PLPRGCPCSAL 279
           PLP GCP +A+
Sbjct: 215 PLPLGCPVNAI 225


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 203 NCEKYISLYQHSVVVMATLIQE 268
           N EK+ S  +HS +V   +I++
Sbjct: 106 NSEKHASFLKHSNIVKVLMIEQ 127


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +3

Query: 225 YISTPWWSWRRSSKRMVLKS*ARAPTG*WQTMAYPHTVSQH 347
           Y +   W ++      VLK  A  P   +  + Y  ++S+H
Sbjct: 211 YTNNSKWDFKVIKATKVLKMYACCPNDTYPMIVYEFSISRH 251


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 362 GLAPYVLGHCVWICHGLPL 306
           GL PY L H + +  G P+
Sbjct: 453 GLCPYTLKHKIRVPPGTPI 471


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,842
Number of Sequences: 438
Number of extensions: 2312
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)