Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26b16
(358 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365... 28 1.9
01_06_1682 - 39130696-39131705,39132355-39132583 27 3.3
01_06_1309 - 36170947-36171077,36171227-36172198,36172285-361724... 27 3.3
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 27 5.7
01_06_0401 + 29038306-29038529,29038815-29038967,29039489-290402... 27 5.7
12_02_0142 - 14306325-14306490,14306584-14306687,14306788-143069... 26 7.6
08_02_0775 + 21070898-21071290,21071406-21071504,21075103-210751... 26 7.6
08_01_0464 - 4092169-4092837,4093215-4093298,4094753-4094875,409... 26 7.6
>03_01_0475 +
3656628-3656791,3656944-3657013,3657114-3657310,
3657409-3657484,3657794-3657877,3658247-3658326,
3658422-3658548,3658727-3658786,3658874-3658924,
3659013-3659171,3659296-3659428,3659545-3659717
Length = 457
Score = 28.3 bits (60), Expect = 1.9
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = +2
Query: 14 ILLGHTMGAYTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYI 193
I+L + AY + C++V+ + T+ G +C K+ + F ALY
Sbjct: 194 IVLQYRWIAYVSI-FVGCCFLVVFYAGTKEPTLQSGSDCKKSARISWGYWFKK---ALYY 249
Query: 194 MIATVWSLKNNLTS 235
+A ++ L +T+
Sbjct: 250 QVALLYMLARLITN 263
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 257 SIQVVPFSYNDPPPPF 304
S Q P SYN PPPP+
Sbjct: 248 SYQAPPTSYNHPPPPY 263
>01_06_1309 -
36170947-36171077,36171227-36172198,36172285-36172413,
36172535-36172779,36172904-36173055,36173202-36173306
Length = 577
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 239 YASNLQSIQVVPFSYNDPPPPFSNI 313
YASN ++ + PF+Y PP +N+
Sbjct: 424 YASNFPAMPLSPFNYTGTPPNNTNV 448
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 218 KNNLTSFYASNLQSIQVVPFSYNDPPPPFSNIV 316
+N ++S A S+ +VP S N PPPF+ V
Sbjct: 482 QNFVSSSVAPVAPSLGMVPLSNNQGPPPFTQPV 514
>01_06_0401 +
29038306-29038529,29038815-29038967,29039489-29040296,
29040393-29040488,29040982-29041251
Length = 516
Score = 26.6 bits (56), Expect = 5.7
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 77 PYNMIWHIDNPCTRPLCG 24
PY +WH+ P PL G
Sbjct: 33 PYRKVWHVPGPVPLPLIG 50
>12_02_0142 -
14306325-14306490,14306584-14306687,14306788-14306967,
14307155-14307253,14307346-14307535,14307722-14307748,
14308190-14308506,14308532-14308675,14308799-14308905,
14309085-14309357,14309470-14309827
Length = 654
Score = 26.2 bits (55), Expect = 7.6
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Frame = -3
Query: 338 FYFLCHPLQC*RTVAADR-----CMKT--EQLEYFVNLKRKN*SNYFLKTTLLQS*CTK 183
F+F HP++ + D+ C+ EQ+ YF ++KR + S +F+ + L + TK
Sbjct: 513 FFFASHPIKLFFPIVRDKHWVLTCINLLWEQINYFDSIKRGDISQWFILSQNLVTNFTK 571
>08_02_0775 +
21070898-21071290,21071406-21071504,21075103-21075126,
21076344-21076391,21076536-21076788,21076945-21077055,
21077544-21077680,21077778-21077891,21077982-21078181,
21078268-21078516,21078730-21078886
Length = 594
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 5 ELLILLGHTMGAYTDYRYAKSCYMVILFVSVMSFTIV 115
E+ + + + + D YAK Y + LF+ ++F IV
Sbjct: 548 EIFVGICIILSGFYDVLYAKKGYYIFLFIQGLAFLIV 584
>08_01_0464 -
4092169-4092837,4093215-4093298,4094753-4094875,
4095001-4095042
Length = 305
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +2
Query: 2 LELLILLGHTMGAYTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSS 157
L L+ +G + A TD YA+ Y V + ++F +V+ + CL+ + +S
Sbjct: 255 LFLMASIGTGLEALTD-DYARKLYYVAAALLTVAFLLVVVVNCLRVSELPTS 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,282,276
Number of Sequences: 37544
Number of extensions: 139981
Number of successful extensions: 392
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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