Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26b16
(358 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021479-1|CAA16321.2| 346|Caenorhabditis elegans Hypothetical ... 32 0.10
Z83218-6|CAI58632.1| 273|Caenorhabditis elegans Hypothetical pr... 31 0.24
Z92829-14|CAB07342.2| 337|Caenorhabditis elegans Hypothetical p... 30 0.55
AC006675-10|AAK84551.2| 280|Caenorhabditis elegans Serpentine r... 29 0.95
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 28 2.2
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 28 2.2
AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical ... 27 3.9
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 27 3.9
AY305834-1|AAR11979.1| 327|Caenorhabditis elegans nuclear recep... 26 8.9
AF083228-1|AAD03686.1| 415|Caenorhabditis elegans nuclear recep... 26 8.9
AC006810-4|AAT68890.1| 425|Caenorhabditis elegans Nuclear hormo... 26 8.9
AC006810-3|AAF59634.2| 414|Caenorhabditis elegans Nuclear hormo... 26 8.9
AC006675-3|AAK84550.1| 335|Caenorhabditis elegans Serpentine re... 26 8.9
>AL021479-1|CAA16321.2| 346|Caenorhabditis elegans Hypothetical
protein Y22F5A.2 protein.
Length = 346
Score = 32.3 bits (70), Expect = 0.10
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +2
Query: 17 LLGHTMGAYTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCAL--- 187
L+ + G DYRY + +IL + + F+I+M L + ++ F S +
Sbjct: 34 LICYHHGMIDDYRYYLLYFQIILLIFDIYFSILMVPIPLFPVIGGYTIGFLSNFFGISTH 93
Query: 188 YIMIATVWSLKNNLTSFYASNLQSIQVV 271
Y M+ T+W + N T + S L+ QVV
Sbjct: 94 YQMVFTLWCIGNTNTCIFISLLKRHQVV 121
>Z83218-6|CAI58632.1| 273|Caenorhabditis elegans Hypothetical
protein C31A11.10 protein.
Length = 273
Score = 31.1 bits (67), Expect = 0.24
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +2
Query: 41 YTDYRY-AKSCYMVILFVSVMSFT--IVMGLECLKTKLVDSSLMFNSFMCALYIMIATVW 211
Y +YR +C++ + ++S I+ G+ C ++D+ L +SF+CA+ T W
Sbjct: 115 YYNYRQNLLNCFVWFFIICIVSIDQYILFGV-C--DVVIDTPLDCDSFLCAMNQCYTTYW 171
Query: 212 SLKNNLTSFYASNLQSIQVVPF 277
L +T+F SN+ VV F
Sbjct: 172 LLHERITTF--SNVFFSAVVTF 191
>Z92829-14|CAB07342.2| 337|Caenorhabditis elegans Hypothetical
protein F10A3.8 protein.
Length = 337
Score = 29.9 bits (64), Expect = 0.55
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +2
Query: 65 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTSFYA 244
SCY +I+ + + F KLV S+ F L I+ A+VW L N+L +
Sbjct: 100 SCYAIIISLITIHFYYRYLSVMFPVKLVRFSVRNLPFWILLVILNASVWFLLNSLVN-GP 158
Query: 245 SNLQSIQVVP 274
S +Q ++P
Sbjct: 159 SEIQDAILIP 168
>AC006675-10|AAK84551.2| 280|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 57 protein.
Length = 280
Score = 29.1 bits (62), Expect = 0.95
Identities = 18/77 (23%), Positives = 32/77 (41%)
Frame = +2
Query: 41 YTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLK 220
Y +R S Y+V+ F+S+ F L ++D + +F C + W +
Sbjct: 116 YHKHRNKISMYLVLFFISLFVFFDQFMLFGYCGNVIDVPVNCENFQCTVNQCYLQYWMVH 175
Query: 221 NNLTSFYASNLQSIQVV 271
+ F S+L +I V
Sbjct: 176 EQVVFFVISSLSTILFV 192
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 231 VKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSK 121
+KL F D T I YK I LN+K+L + K K
Sbjct: 1361 LKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLK 1397
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 231 VKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSK 121
+KL F D T I YK I LN+K+L + K K
Sbjct: 1361 LKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLK 1397
>AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical
protein Y113G7A.3 protein.
Length = 821
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 213 DHTVAIIMY--KAHINELNIKLLSTSFVFKHSKPIT 112
D V +I Y ++ELN + +S S+VFK +K +T
Sbjct: 165 DALVGLITYGRMVQLHELNTQGISRSYVFKGTKEVT 200
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 206 VWSLKNNLTSFYASNLQSIQVVPFSYNDP 292
VWSL +FY+ L S+ +PFS P
Sbjct: 16 VWSLAVLCLAFYSRRLSSLASLPFSKTTP 44
>AY305834-1|AAR11979.1| 327|Caenorhabditis elegans nuclear receptor
NHR-13 protein.
Length = 327
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 358 FFFYKLLFIFYVIHYNVRERWRRIVV*KRNNL 263
F K + +++V +Y + E RRI + +RN L
Sbjct: 234 FCLLKAICVWHVSYYRLSEDGRRIAIAQRNRL 265
>AF083228-1|AAD03686.1| 415|Caenorhabditis elegans nuclear receptor
NHR-13 protein.
Length = 415
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 358 FFFYKLLFIFYVIHYNVRERWRRIVV*KRNNL 263
F K + +++V +Y + E RRI + +RN L
Sbjct: 322 FCLLKAICVWHVSYYRLSEDGRRIAIAQRNRL 353
>AC006810-4|AAT68890.1| 425|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 13, isoform b protein.
Length = 425
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 358 FFFYKLLFIFYVIHYNVRERWRRIVV*KRNNL 263
F K + +++V +Y + E RRI + +RN L
Sbjct: 321 FCLLKAICVWHVSYYRLSEDGRRIAIAQRNRL 352
>AC006810-3|AAF59634.2| 414|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 13, isoform a protein.
Length = 414
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 358 FFFYKLLFIFYVIHYNVRERWRRIVV*KRNNL 263
F K + +++V +Y + E RRI + +RN L
Sbjct: 321 FCLLKAICVWHVSYYRLSEDGRRIAIAQRNRL 352
>AC006675-3|AAK84550.1| 335|Caenorhabditis elegans Serpentine
receptor, class h protein35 protein.
Length = 335
Score = 25.8 bits (54), Expect = 8.9
Identities = 8/25 (32%), Positives = 19/25 (76%)
Frame = +3
Query: 231 LVFTLQIYKVFKLFRFHTTIRRHRS 305
++FT +++K+F ++R H + +R+ S
Sbjct: 113 ILFTSRLFKIFNMYRSHCSWQRYFS 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,506,486
Number of Sequences: 27780
Number of extensions: 131612
Number of successful extensions: 452
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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