Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26b15
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    29   0.60 
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    29   0.79 
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   3.2  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    26   4.2  
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    26   4.2  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    26   5.6  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   5.6  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   7.4  
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    25   7.4  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    25   7.4  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   9.7  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.7  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +2

Query: 113 PIKKMRKRKSLKLNEEDSDGSGQ----GAEPEEF-QDSGEDWTPDADSNEPASRTSRKRV 277
           P KK        LNE+    S +      + EEF +DS      + D+NEP+++ + K V
Sbjct: 210 PKKKKNASWGKMLNEDPEYDSAEEDYLSTDSEEFSEDSDNSSEENKDTNEPSTKDAEKTV 269

Query: 278 SKPPVN 295
            +  VN
Sbjct: 270 PEDVVN 275


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = +2

Query: 50  SPKVKSD*RGSVSLSYFSRTIPIKKMRKRKSLKLNE-EDSDGSGQGAEPEEFQDSGEDWT 226
           SPK K +   S S    S +  + +  K+K   LNE ED D +G G    E  D  E   
Sbjct: 36  SPKKKKNTTSSGS----SESDSMSQNDKKKDSSLNESEDEDFAGFGESASE-NDELESAE 90

Query: 227 PDADSNEPASRTSRKRVSKPPVNNTKKKRK 316
            +A+++E +S  S+K  SK      KK +K
Sbjct: 91  SEAENDEESS--SQKSNSKESHAQRKKLQK 118


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 143 LKLNEEDSDGSGQGAEPEE---FQDSGEDWTPDADSNEPASRTSRKRVSKPPVNNTKKKR 313
           L L+EE+S+ S +  + ++    +D G +   D D         +K+ SK   +  KK R
Sbjct: 136 LSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKKKKKSKENDDAPKKDR 195

Query: 314 K 316
           K
Sbjct: 196 K 196


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 155 EEDSDGSGQGAEPEEFQDSGE-DWTPDAD 238
           EE+ D  G+G E EE +D G+ D   D D
Sbjct: 187 EEEFDEEGEGDEEEEEEDDGDGDGEGDGD 215


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 533 VISKLDELNLWKIDGKALLQKFIPMESN 616
           V S+L EL++WK   K +     P+ESN
Sbjct: 232 VDSELTELDIWKNPKKTMFLPVKPLESN 259


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 149 LNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPAS 256
           ++ +D D S Q A  EE+ D  +D   D D NE ++
Sbjct: 228 IDGQDDDSSEQTAAFEEYDDDDDD---DVDDNEQSN 260


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 581 LCHQFSTSSVHQVLILQYL 525
           LCHQ S+S  +Q L +QYL
Sbjct: 555 LCHQQSSSFTNQDLAIQYL 573


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 149 LNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTSRKRVSKPPVN 295
           +N ED+         + F + G +    A+SN+  S  SRKR + P  N
Sbjct: 57  VNSEDTPSEDDSMSMDAFLEGGFEELDSANSNDAGS--SRKRKNLPNEN 103


>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 570 LMAKHYYRNLSQWNQMEEFYTNVHVCILGG 659
           L+ +H Y NLSQ   +E+F   +     GG
Sbjct: 24  LLEQHIYSNLSQCESLEDFRLQLSSTDYGG 53


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 152 NEEDSDGSGQGAEPEEFQDSGEDWTPDADS 241
           N  D +GS + +  EE    GE  TP+ D+
Sbjct: 91  NGVDGEGSDESSSEEEEDSDGELVTPEVDA 120


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1019

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 131  KRKSLKLNEEDSDGSGQGAEPEEFQDSGEDW 223
            + +S + +E+ S+  G      E ++SGEDW
Sbjct: 962  EEESEEYSEDASEEDGYSESEVEDEESGEDW 992


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 311 VSFWCCSPVALIHVFC*YEMQVRSNRR 231
           VSF  C  VA+  +   Y + VR NRR
Sbjct: 439 VSFVVCYCVAIFIIIAIYAVNVRENRR 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,532
Number of Sequences: 5004
Number of extensions: 51434
Number of successful extensions: 192
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)