Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26b07
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 149 3e-37
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa... 56 4e-09
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 34 0.016
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 33 0.038
SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar... 33 0.050
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 33 0.050
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 29 0.61
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos... 28 1.1
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 28 1.1
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 28 1.4
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 1.9
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 27 2.5
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 27 2.5
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 3.3
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 3.3
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 27 3.3
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 26 4.3
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa... 26 4.3
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 26 4.3
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 5.7
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 5.7
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 26 5.7
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 26 5.7
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 26 5.7
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 25 7.6
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 7.6
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 25 7.6
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma... 25 7.6
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 149 bits (362), Expect = 3e-37
Identities = 66/151 (43%), Positives = 105/151 (69%)
Frame = +3
Query: 147 MNRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTELRKYKDQMSKMREGPAKNS 326
M+RLFGR P +P S+TD I ++D R+D++E K+ KLD +L ++ +++ R GP + +
Sbjct: 1 MHRLFGRKPPTQPTASLTDAIDSLDKRSDSVEVKIAKLDAQLSVFQQKIANTRPGPGQTA 60
Query: 327 VKQKAMRVLKQKKMYEQQLDSLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEF 506
+KQ+AM VL+QKK+YE QL L+ QSFNMEQA T++LK+T T+ M++ Q+K +
Sbjct: 61 LKQRAMNVLRQKKIYESQLQQLQQQSFNMEQAAMTTESLKNTMATVQTMQETARQLKSQS 120
Query: 507 KKINIDSIDDVNDELADMMEQADEVQEALGR 599
K ++I+ I+ + DE+ D M+ A E+ E LG+
Sbjct: 121 KNVSIEKIEKLQDEIQDYMDAAGELNEVLGQ 151
>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
Vps32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 56.4 bits (130), Expect = 4e-09
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Frame = +3
Query: 288 QMSKMREGPAKNSVKQK--AMRVLKQKKMYEQQLDSLRAQSFNMEQANYATQTLKDTHTT 461
Q+++ E KN+ K A+ LK+KKM+E +L + N+EQ ++ Q T
Sbjct: 41 QIAEQTEIARKNATTNKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFET 100
Query: 462 ISAMKDGVTQMKKEFKKINIDSIDDVNDELADMMEQADEVQEALGRQYGM 611
+ AM+ G MK + ++ D +D + D++ D ++E+ + G+
Sbjct: 101 LQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISEEISTMISTPVGL 150
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 34.3 bits (75), Expect = 0.016
Identities = 33/147 (22%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Frame = +3
Query: 231 DNIEQKVQKLDTELR---KYKDQMSKMREGPAKNSVKQ--KAMRVLKQKKMYE------- 374
DN+E+K+++L E+R + KD+ SK R A+ +Q + R +++K E
Sbjct: 417 DNLERKLRQLRVEIRALEREKDEASKERLKAARKEAEQVEEETRPIREKYELEKSRGSEL 476
Query: 375 ----QQLDSLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDV- 539
++LD L+A++ + E+ N T + I ++ + ++++ +K + ++I +
Sbjct: 477 QDAKRRLDELKAKAEDAERRNDFTLAADLKYYGIPDLQKRIEYLEQQKRKADAEAIANAQ 536
Query: 540 --NDELADMMEQADEVQEALGRQYGMP 614
++ L + D++ E + R G+P
Sbjct: 537 PGSEPLLIDVVGPDQINEIVARWTGIP 563
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 33.1 bits (72), Expect = 0.038
Identities = 29/144 (20%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Frame = +3
Query: 168 AKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMR 347
AK + +TD I +A +EQK + + +RK + ++ + + SV +
Sbjct: 386 AKLRSTNAQLTDRITQESKKASFLEQKASEQEEVIRKLEKDLADV---DVEGSV-YLSNT 441
Query: 348 VLKQKKMYEQQLDSLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDS 527
+++ Q + N N + + + T SA+ D + Q + F++ N+
Sbjct: 442 TYRREGTSGQLSPTSSIMGGNPSLFNGSVLSRNSVNETGSAIVDVIKQQRDRFRRANVTL 501
Query: 528 IDDV---NDELADMMEQADEVQEA 590
++ V ND++A + + +EV+++
Sbjct: 502 VNQVSAANDKIALLESKLEEVEKS 525
Score = 29.5 bits (63), Expect = 0.46
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +3
Query: 231 DNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYE 374
+ +E++V+ L EL KYKD + E A + ++ L+Q+K+Y+
Sbjct: 141 EKLEREVENLRKELDKYKDLVETEAEKRAAITKEECEKSWLEQQKLYK 188
>SPBC215.14c |vps20||vacuolar sorting protein
Vps20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 226
Score = 32.7 bits (71), Expect = 0.050
Identities = 19/92 (20%), Positives = 43/92 (46%)
Frame = +3
Query: 318 KNSVKQKAMRVLKQKKMYEQQLDSLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMK 497
++S K+ A+R LK KK+Y + Q N+EQ + + +++G ++
Sbjct: 48 RDSDKRGALRALKAKKLYSGLITQTYGQLGNIEQLLSTIEFTLIQKDVMFGLQEGTNLIR 107
Query: 498 KEFKKINIDSIDDVNDELADMMEQADEVQEAL 593
+ + ++ + + ++ + M DEV + L
Sbjct: 108 QLQADMPLERVGRICNDRDEAMSYVDEVNDML 139
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 32.7 bits (71), Expect = 0.050
Identities = 41/176 (23%), Positives = 79/176 (44%), Gaps = 21/176 (11%)
Frame = +3
Query: 129 KRFKPNMNRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTELRKYKDQMSKMRE 308
K K N L + +PG S+T +K DN+ ++V L + DQ++K +
Sbjct: 227 KDLKDRKNALAKEFEESQPGSSLT--LKEQANVIDNLRKEVFGLKLKCYFLYDQLNKFHD 284
Query: 309 GPAKNSVKQ----KAMRVLKQKKM--YEQQLDSLRA-----QSFNMEQANYATQ---TLK 446
++ +KQ K + + Q+ + YE+++ L + QSFN+ + A TL+
Sbjct: 285 QEVQDIMKQNIDLKTLTMELQRAVAGYEKKISGLESRIKPDQSFNLSTPSPAPSNLITLQ 344
Query: 447 DTH----TTISAMKDGVTQMKKEFKKINIDSIDDVNDE---LADMMEQADEVQEAL 593
+ + + K ++KE K S+ N++ L++M++ +EAL
Sbjct: 345 SRYSQALSELETTKRAFAALRKEKSKKTNYSVGAYNEDRNVLSNMLDNERREKEAL 400
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 29.1 bits (62), Expect = 0.61
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +3
Query: 135 FKPNMNRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTELRKYKDQMSKMREGP 314
F+ + +R ++ K P P T + + ADN + K +D + + D + M E P
Sbjct: 1459 FETSSHRPERSSEKKSPSPVFTSVKQTAENDADNEDDKTD-MDDQTEETLDADNTMEEEP 1517
Query: 315 AKNSV 329
+K+ +
Sbjct: 1518 SKDDL 1522
>SPAC607.05 |rpn9||19S proteasome regulatory subunit
Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +3
Query: 114 FTEFYKRFKPNMNRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTELRKYKD 287
+T F F+PN+N+L K G + N D N+ Q V +LD E KYKD
Sbjct: 64 YTNFVNSFRPNINQL----KAVYMGLKAFESCSN-DEALRNLNQIVNELDEE--KYKD 114
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/93 (19%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = +3
Query: 228 ADNIEQKVQKLDTELRKYKDQMSKMRE--GPAKNSVKQKAMRVLKQKKMYEQQLDSLRAQ 401
++ +++ V+KLD + Y+D M E +S+ + + + E S+
Sbjct: 46 SERLQESVKKLDANKKTYEDAKLSMGEKMDDLNSSIVSLLQELSTLQSVAENTQSSIVQM 105
Query: 402 SFNMEQANYATQTLKDTHTTISAMKDGVTQMKK 500
+ ++ ++A Q L + T + ++ VT +K
Sbjct: 106 TSEIKNLDFAKQNLATSMTMLKRLQMLVTAYEK 138
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/83 (19%), Positives = 39/83 (46%)
Frame = +3
Query: 300 MREGPAKNSVKQKAMRVLKQKKMYEQQLDSLRAQSFNMEQANYATQTLKDTHTTISAMKD 479
+ + + NSV + + Q Y ++DSLR Q FN+++ + + + + +
Sbjct: 299 LNDANSSNSVPVEFNSLHSQNVDYRDEVDSLRPQ-FNVDEQSSISHSSNASENIVDGAVT 357
Query: 480 GVTQMKKEFKKINIDSIDDVNDE 548
++ +F +++ + I ND+
Sbjct: 358 QANGIESDFTRVDHEPIIVNNDD 380
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 27.5 bits (58), Expect = 1.9
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Frame = +3
Query: 237 IEQKVQKLDTELRKYKDQMSKM--REGPAKNSVKQKAMRVLKQKKMYEQQLDSLRAQSFN 410
IE + + E+++ ++S++ PA VK + + ++ Q L +
Sbjct: 441 IEARQSEKLNEVQEETQRLSQLLISSQPALTEVKHLKLCLSDSQEELLQLNAKLEKANIV 500
Query: 411 MEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSID-DVNDEL 551
+++ N A L S+MKD +T+M + K+ I+S + +VN E+
Sbjct: 501 IDELNSAKLKLSKQVEEESSMKDDLTEMNQRLKE-QIESYENEVNSEI 547
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 485 YTILHCRYCGMSVLQCLRCIICLFHVERLGTETIKLLFIHFLLF 354
Y +HC + L LR +IC+ ++ + + HFLLF
Sbjct: 381 YLFMHCNNGEKTSLHLLRTLICM-KLDFSNAQLAAKILFHFLLF 423
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 27.1 bits (57), Expect = 2.5
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 446 GHSYHNICNEGWC 484
GH +HN C E WC
Sbjct: 57 GHYFHNHCLESWC 69
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 177 KEPGPSITDCIKNVDGRADNIEQKVQKLDTELRKYKDQMSK 299
KE + D ++++ G DN+ ++ TEL+K D + K
Sbjct: 930 KEKHQQLLDLLESLVGNNDNLIDSIKTPHTELQKITDHVLK 970
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 3.3
Identities = 20/98 (20%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Frame = +3
Query: 228 ADNIEQKVQKLDTELRKYKDQMSKMREG-PAKNSVKQKAMRVLKQKKMYEQQLDSLRAQS 404
A I ++ K D +K K + + P+K SVK++ K++ E + +S ++S
Sbjct: 37 AKEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96
Query: 405 FNMEQANYATQTLKDTHTTISAMKDGVTQ--MKKEFKK 512
+ + ++ + ++ ++ S+ + + +K E KK
Sbjct: 97 ESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKK 134
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 231 DNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKK 365
D IEQ + ++K KD + + + PA+ ++ A +V+ +KK
Sbjct: 334 DAIEQTITWAKEYIKKAKDSLLCLPDSPARKALFALADKVITRKK 378
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/100 (16%), Positives = 47/100 (47%)
Frame = +3
Query: 234 NIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDSLRAQSFNM 413
+IE + + E Y + R AKN+ K++ R ++ + YE+ + + + + +
Sbjct: 818 SIETFTKLVSVEHPPYSPTSIEQRAKMAKNTTKRQLERAIQAQIEYEKSV-AAKLEDARI 876
Query: 414 EQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSID 533
++ + L + + ++ Q+++E +K+ + ++
Sbjct: 877 QREKEKARRLAEEEALLKEKQERERQLQEERQKMQEEVLE 916
>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +3
Query: 201 DCIKNVDGRADNIEQKVQKLDTELRKYKDQMSKM 302
+C K VDG + IE++++ D ++ ++Q ++
Sbjct: 34 ECYKTVDGDDNPIEERIKACDAGIQTSEEQKKEL 67
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 26.2 bits (55), Expect = 4.3
Identities = 23/124 (18%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Frame = +3
Query: 228 ADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVK-QKAMRVLKQKKMYEQQLDSLRAQS 404
A+N + + ++ E ++ +S++ KN +K + VLK+ + + +S +
Sbjct: 2 AENAGNETKLVENE--NLQEDLSRLNLEDEKNELKLNEKGGVLKENDEHLECSESFK--- 56
Query: 405 FNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDELADMMEQADEVQ 584
+ + A QTLK+++ ++ + K + + + ELA ++ E++
Sbjct: 57 -KLAEKEEAYQTLKNSYNSLKQQHSNLLGKVSGIKSTLGERLKKDSQELAQNRKRIQELE 115
Query: 585 EALG 596
++LG
Sbjct: 116 KSLG 119
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 470 CRYCGMSVLQCLRCIICLFHVERLGTETIKLLFIHFL 360
C Y +L C ++ LF V LG E L I+ L
Sbjct: 689 CFYLEFEILYCSAIVLFLFSVMHLGAENPLLESIYLL 725
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 390 LRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDE-LADMME 566
L + +E+AN + + + +++ + KK+ KK+N DS DD+ + +++
Sbjct: 50 LTKKDVEVEEANGVEEAAETIESDTKEVQNIKPKSKKKKKKLN-DSSDDIEGKYFEELLA 108
Query: 567 QADEVQE 587
+ DE ++
Sbjct: 109 EEDEEKD 115
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +3
Query: 318 KNSVKQKAMRVLKQKKMYEQQLDSLRAQS-----FNMEQANYATQTLKDTHTTI 464
KN +K+ A+ K M + + +L + +++E+ + +Q LKDT TT+
Sbjct: 173 KNDLKKVALSP-SLKSMVDDETTALETHNDMQDIYSLEETKFVSQHLKDTLTTV 225
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.8 bits (54), Expect = 5.7
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Frame = +3
Query: 231 DNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDSLRAQSFN 410
DN++Q ++ + + K + K+ E N + + M + +++ QL L+
Sbjct: 246 DNLKQLKKETRDNVEETKHLLEKLTE---VNVMCDRHMDAISSEELACHQLTQLKKVVQT 302
Query: 411 ME----QANYATQTLKDTH--TTISAMKDGVTQMKKEFKKINID 524
+E + ++ +KD I+ + VTQ+KK+ ++N+D
Sbjct: 303 LEDIYSEHKKVSEDVKDQRFLEAINGINSIVTQLKKKSTELNVD 346
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -3
Query: 648 QVLQQAH-HHQSLAYHIACRGLLELHQLVPSYQLTHHLHHQW 526
++LQQA + SL Y + C+ L Q + H L H W
Sbjct: 92 ELLQQARLNGDSLTYALLCQASLNPTQRQLGLPVLHELIHNW 133
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 570 LVPSYQLTHHLHHQWNQY*SS*ILFSFVLHHPSLQIL 460
L P + H+H Q+N + +L+S VL P +L
Sbjct: 140 LSPGLLIIDHIHFQYNGFLFGLLLWSIVLAKPEKNML 176
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +3
Query: 237 IEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDSLRAQSFNME 416
+EQ +++L ELR +++ K +N + K +K +YE + A + N +
Sbjct: 517 LEQIIEELHEELRSLEEESIKESSATQQNENQHKRS---SRKLLYEDKQAIQEAHTINTK 573
Query: 417 QANYATQTL 443
+ + TL
Sbjct: 574 RKLWPQSTL 582
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 7.6
Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 6/151 (3%)
Frame = +3
Query: 132 RFKPNM-NRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTELRKYKDQMSKMRE 308
+ K NM N R + +E G D IKN E+ QKL ++K ++
Sbjct: 183 KVKQNMRNGASARDQAREQGSKAKDKIKNDPDAQKAKEETKQKLQDLYEEFKSVAVDLQG 242
Query: 309 GPAKNSVKQKAMRVLKQKKMYEQQLDSLRAQSFNM-----EQANYATQTLKDTHTTISAM 473
P Q +R L + ++ +D L QS N+ E + A Q LK I +
Sbjct: 243 DPK----YQHPVRSL--LNLIDKFIDKLSEQSGNVTADTNEHYDRAMQYLKQLVENI--L 294
Query: 474 KDGVTQMKKEFKKINIDSIDDVNDELADMME 566
+ + K++ D+ +D +EL D +E
Sbjct: 295 NRSLDNLIDTLKQVQHDAEND--EELKDWLE 323
>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 366 MYEQQLDSLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVN 542
+Y Q D +A S+ +E A+YA L T + + + +E + +NI D +N
Sbjct: 120 LYIQVYDPYKA-SYGVEDADYAISQLAQTTMRSEIGRLTLDHVLRERQSLNIHITDAIN 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,161
Number of Sequences: 5004
Number of extensions: 50985
Number of successful extensions: 210
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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