Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26b02
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    27   0.86 
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   1.5  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    25   2.6  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   3.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   3.5  
SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c...    25   3.5  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    24   4.6  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    24   6.1  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    23   8.1  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    23   8.1  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    23   8.1  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    23   8.1  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    23   8.1  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    23   8.1  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    23   8.1  

>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 26.6 bits (56), Expect = 0.86
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 119 CTISYRCQGTLRSRHRYIRKRLPSHQTWD 205
           C ++Y  +G L  + R  +K  PSH +WD
Sbjct: 206 CDVTYE-EGPLTKKLRGPKKYKPSHSSWD 233


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +3

Query: 6   HFLFGRP--LVYNRYKRILSKHTRLQLS*RLGVYMRWSPHAQFPIDVKAPLEAGIDTSEK 179
           HF F +P   ++  +  I  ++  L+   +      W+ +  FP   K P E G+ +  +
Sbjct: 551 HFDFAKPELKMFKIFNFIREQYPALKSGWKSVKLRNWTEYVHFPNSGKTPTEVGVWSIVR 610

Query: 180 GFL 188
           G L
Sbjct: 611 GAL 613


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +3

Query: 144 APLEAGIDTSEKGFLRIKPGTNELTFVVSHNCRLTPLEEGPCDTETHKVILETKK 308
           APL++ + T+      +KP     +   S     T L +G  + ETH  +   KK
Sbjct: 144 APLQSKVTTAS-----LKPNIPRTSMSSSPTASRTSLRKGAGELETHSAVKSAKK 193


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 287  FMCLCVTRSLFEWSQPTVVAHD 222
            F+ L + R+++ W  P VV HD
Sbjct: 981  FVPLSLGRAIYAWCFPNVVKHD 1002


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 92  WSLYALVTPCTISYRCQGTLRSRHRYIRKRLPSHQT 199
           W LY +V  CTI+Y     +   H  +R+ L + Q+
Sbjct: 836 WKLYLIVACCTITY--TSNVDYSHTDLRRTLTAVQS 869


>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 219 FVVSHNCRLTPLEEGPC 269
           FV+ HNC L  L  G C
Sbjct: 124 FVLQHNCTLADLWSGKC 140


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 3    MHFLFGRPLVYNRYKRILSKHTRLQLS*RLGVYMRWSPHAQFPIDVK 143
            M FL+ R ++Y  Y+R+L      + S     Y   SP  ++P D K
Sbjct: 1273 MKFLYERSMMYKEYQRVLECEYEYRKS--HDFYPTLSP-VRYPYDFK 1316


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 19  EGRWSTTDTRGY 54
           EGRWS  D  GY
Sbjct: 743 EGRWSAIDANGY 754


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 306 FLFLKLLYVSLCHTVPLRVESAY 238
           F FL +L++S  ++VPL  + +Y
Sbjct: 148 FFFLTILFLSKLNSVPLNKKISY 170


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 66   YVWIISSCIC 37
            Y+W+ S+CIC
Sbjct: 1509 YLWLFSNCIC 1518


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 50  DIIQTYQASAVMKTWSL 100
           D+I+TYQA  + + W +
Sbjct: 437 DVIRTYQAKKLFEDWKI 453


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 204 TNELTFVVSHNCRLTPLEEGPC-DTETHKVIL 296
           T+ ++    +NC  T  +  PC D ++H ++L
Sbjct: 240 TSHVSGFYVNNCTSTKFDPSPCDDLQSHSLVL 271


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 300 FLKLLYVSLCHTVPLRVES 244
           FL L Y  LC+++P+ + +
Sbjct: 34  FLTLRYTLLCYSIPIHIHT 52


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 306 FLFLKLLYVSLCHTVPLRVESAYSCGSRRKSAHLS 202
           FL  +++ V  C  +PL + S  S G    S HL+
Sbjct: 225 FLSFRVMLVK-CVGLPLAIASGLSVGKEGPSVHLA 258


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 249 ESAYSCGSRRKSAHLSQV*CEG 184
           E+A  C S  K++ LS++ C G
Sbjct: 296 EAAQECASLGKNSQLSEIICAG 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,377,997
Number of Sequences: 5004
Number of extensions: 26063
Number of successful extensions: 67
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)