Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26b02
         (311 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0144 + 5815403-5815520,5815551-5816314                           30   0.44 
08_01_0216 - 1717696-1718265,1718856-1720082,1720558-1720627,172...    29   0.77 
12_01_0997 - 10114571-10114864,10115422-10115795,10115910-10116144     29   1.0  
08_02_0238 + 14665813-14668798,14669088-14669125                       26   5.4  
12_01_1001 - 10145663-10147006                                         26   7.2  
05_07_0159 + 28084303-28084809                                         26   7.2  
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964...    26   7.2  
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232...    25   9.5  

>10_02_0144 + 5815403-5815520,5815551-5816314
          Length = 293

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 104 ALVTPCTISYRCQGTLRSRHRYIRKRLPSHQTW 202
           +L  P T S RC+  + ++ R IR R  S  TW
Sbjct: 115 SLAAPATSSTRCRFAVANKRRQIRARRSSSPTW 147


>08_01_0216 -
           1717696-1718265,1718856-1720082,1720558-1720627,
           1721579-1721602,1722073-1722140
          Length = 652

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = -2

Query: 205 VPGLMRRKPFSDVSMPASKGALTSI 131
           +PGL RRK  SDVS   S  +LTSI
Sbjct: 268 LPGLNRRKSISDVSSCLSISSLTSI 292


>12_01_0997 - 10114571-10114864,10115422-10115795,10115910-10116144
          Length = 300

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 114 PHAQFPIDVKAPLEAGIDTSEKGFLRIKPGTNELTFVVSHN 236
           P  Q  ++VK P+   IDTS  G L I+ G  E+   V H+
Sbjct: 179 PWIQLGVEVKGPVHHDIDTSANGMLFIRCGV-EVKGPVHHD 218


>08_02_0238 + 14665813-14668798,14669088-14669125
          Length = 1007

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 83  MKTWSLYALVTPCTISYRCQGTLRSRHRYIRKRLPSHQTWD-K*ADFR 223
           +K ++L  L  P +    C+    +RHR + + + +  TWD K  DF+
Sbjct: 842 IKVFNLDELGAPKSFVAECEAFRNTRHRNLVRVISACSTWDNKGNDFK 889


>12_01_1001 - 10145663-10147006
          Length = 447

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 114 PHAQFPIDVKAPLEAGIDTSEKGFL 188
           P  Q  ++VK P+   IDTS  G L
Sbjct: 268 PWIQLGVEVKGPVHHDIDTSANGML 292


>05_07_0159 + 28084303-28084809
          Length = 168

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 77  AVMKTWSLYALVTPCTISYRCQGTLRSRHR 166
           A++   SL  +  P  +  RC G LRSR R
Sbjct: 53  ALVSMLSLALVKAPLAVGRRCVGRLRSRRR 82


>01_07_0383 -
           43195095-43195322,43195408-43195638,43196134-43196454,
           43196512-43196589,43196664-43197727,43197813-43198503,
           43198743-43199541,43200010-43200158,43200159-43200286,
           43200389-43200494,43200835-43200843,43201332-43201821,
           43201896-43202554,43203759-43203851,43204044-43204196,
           43205092-43205194,43205376-43205467,43206229-43206306,
           43206987-43207049,43207339-43207512
          Length = 1902

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 306 FLFLKLLYVSLCHTVPL--RVESAYSCGSRRKSAHLSQV*CEGSLFLMYR 163
           F + +  YV L  T P   +V  A S  S  K AH +    EGSLF + R
Sbjct: 806 FEWARFAYVVLLPTEPKDSKVIGAQSFSSNIKMAHFAFKVLEGSLFALRR 855


>10_08_0495 -
           18318028-18320399,18322450-18322981,18323097-18323200,
           18323653-18323701,18323979-18324119,18324889-18324957,
           18325048-18325137,18325301-18326251,18326831-18327502
          Length = 1659

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 80  QLKPGMFG*YPLVSVVDQRP 21
           Q++ G+   YPL+S++D+RP
Sbjct: 522 QIERGLKESYPLISILDRRP 541


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,848,747
Number of Sequences: 37544
Number of extensions: 168503
Number of successful extensions: 395
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)