Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26b02
         (311 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical...    29   0.52 
Z81117-2|CAB03314.2|  343|Caenorhabditis elegans Hypothetical pr...    29   0.90 
Z79596-6|CAJ43438.1|  225|Caenorhabditis elegans Hypothetical pr...    28   1.2  
Z79596-5|CAB01858.3|  369|Caenorhabditis elegans Hypothetical pr...    28   1.2  
AL132949-10|CAB61082.1|  721|Caenorhabditis elegans Hypothetical...    27   2.8  
AF003386-1|AAK82899.1|  529|Caenorhabditis elegans Hypothetical ...    27   3.6  
AF003386-2|AAB54255.1|  527|Caenorhabditis elegans Hypothetical ...    26   4.8  
Z82057-4|CAB61024.2|  370|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z81119-10|CAB61032.2|  370|Caenorhabditis elegans Hypothetical p...    25   8.4  
L39925-1|AAA98782.1|  370|Caenorhabditis elegans cathepsin B-lik...    25   8.4  
L39890-1|AAA98788.1|  370|Caenorhabditis elegans cathepsin B-lik...    25   8.4  
AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical...    25   8.4  

>AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical
           protein C15F1.1 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 171 SEKGFLRIKPGTNELTFVVSHNCRLTPLEEGP 266
           SE G++ +KP T E+      N     +EEGP
Sbjct: 264 SEYGYISVKPNTKEVALTTVMNNGFVTVEEGP 295


>Z81117-2|CAB03314.2|  343|Caenorhabditis elegans Hypothetical
           protein T06E6.4 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +2

Query: 14  VWKAVGLQQIQEDIIQTYQASAVMKTWSLYALVTPCTISYRCQGTLRSRHRYIRKRLPSH 193
           +++     QIQ +  + +    VM    ++  +T    ++ CQ T   ++ Y+RK  P  
Sbjct: 114 IYRHTAASQIQNNASKFHLKKLVMILTHIFPFLTALG-TWNCQMTFDQKYEYVRKNYPQC 172

Query: 194 QTW 202
             W
Sbjct: 173 LFW 175


>Z79596-6|CAJ43438.1|  225|Caenorhabditis elegans Hypothetical
           protein C02C6.3b protein.
          Length = 225

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 305 FCF*NYFMCLCVTRSLFEWSQPTVVAHDESQLICPRFDAK 186
           F   N F C C ++    W + T    +++ L+C R   K
Sbjct: 140 FLLRNQFYCDCNSKEFITWLRSTKSVREKNSLVCDRASPK 179


>Z79596-5|CAB01858.3|  369|Caenorhabditis elegans Hypothetical
           protein C02C6.3a protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 305 FCF*NYFMCLCVTRSLFEWSQPTVVAHDESQLICPRFDAK 186
           F   N F C C ++    W + T    +++ L+C R   K
Sbjct: 284 FLLRNQFYCDCNSKEFITWLRSTKSVREKNSLVCDRASPK 323


>AL132949-10|CAB61082.1|  721|Caenorhabditis elegans Hypothetical
           protein Y53F4B.12 protein.
          Length = 721

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 229 LTTKVSSFVPGLMRRKPFSDVSMPASKGALTSIGNCA 119
           L+T V++   G+M  + FS +++PA+K  L+    CA
Sbjct: 281 LSTNVTALSEGIMIPEVFSVINIPAAKYMLSVCSVCA 317


>AF003386-1|AAK82899.1|  529|Caenorhabditis elegans Hypothetical
           protein F59E12.5b protein.
          Length = 529

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 211 SFVPGLMRRKPFSDVSMPASKGALTSIGNCAWGDQ 107
           S +P +    PFS  S   S+GA+ S G+C + ++
Sbjct: 480 SDIPVIPNGDPFSGSSSGGSRGAVWSCGHCTFQNE 514


>AF003386-2|AAB54255.1|  527|Caenorhabditis elegans Hypothetical
           protein F59E12.5a protein.
          Length = 527

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 205 VPGLMRRKPFSDVSMPASKGALTSIGNCAWGDQ 107
           +P +    PFS  S   S+GA+ S G+C + ++
Sbjct: 480 IPVIPNGDPFSGSSSGGSRGAVWSCGHCTFQNE 512


>Z82057-4|CAB61024.2|  370|Caenorhabditis elegans Hypothetical
           protein T10H4.12 protein.
          Length = 370

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 159 GIDTSEKGFLRIKPGTNE 212
           G    EKGF +I+ GTNE
Sbjct: 307 GTSFGEKGFFKIRRGTNE 324


>Z81119-10|CAB61032.2|  370|Caenorhabditis elegans Hypothetical
           protein T10H4.12 protein.
          Length = 370

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 159 GIDTSEKGFLRIKPGTNE 212
           G    EKGF +I+ GTNE
Sbjct: 307 GTSFGEKGFFKIRRGTNE 324


>L39925-1|AAA98782.1|  370|Caenorhabditis elegans cathepsin B-like
           cysteine proteinaseprotein.
          Length = 370

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 159 GIDTSEKGFLRIKPGTNE 212
           G    EKGF +I+ GTNE
Sbjct: 307 GTSFGEKGFFKIRRGTNE 324


>L39890-1|AAA98788.1|  370|Caenorhabditis elegans cathepsin B-like
           cysteine proteinaseprotein.
          Length = 370

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 159 GIDTSEKGFLRIKPGTNE 212
           G    EKGF +I+ GTNE
Sbjct: 307 GTSFGEKGFFKIRRGTNE 324


>AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47G6A.4 protein.
          Length = 627

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 275 CVTRSLFEWSQPTVVAHDESQLICPR 198
           C    +FEW Q  +  H +S ++C R
Sbjct: 285 CEPYEVFEWLQHLLKQHPKSPILCDR 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,667,998
Number of Sequences: 27780
Number of extensions: 148915
Number of successful extensions: 388
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)