Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26b02
         (311 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   0.86 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   4.6  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        20   6.0  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 0.86
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 117 GVTNAYKLQVFMTAEAW 67
           G+T+AYK+++ M    W
Sbjct: 118 GITSAYKIEIDMCDRLW 134


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 234 CGSRRKSAHLSQV*CEG 184
           CG R    H + + CEG
Sbjct: 190 CGDRASGYHYNALTCEG 206


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 55 YPNIPGFSCHE 87
          Y N+P F CH+
Sbjct: 46 YWNVPTFMCHK 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,594
Number of Sequences: 438
Number of extensions: 1843
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)