Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26a19
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce...    29   0.68 
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    27   2.1  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    27   2.1  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    27   2.7  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    26   3.6  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    26   4.8  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    25   6.3  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   8.4  

>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
 Frame = +1

Query: 259 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVY 438
           R R   KLL+++++F++       +DLC  PG ++   +    L K    ++  +     
Sbjct: 22  RARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQ--VLSRELLKNIDTSIAADE---- 75

Query: 439 KPTV--CKRKNFTTITGP-DKSGDVFDKNVVFEISIKCGN-ACDLVLADGSVDVNG 594
           KP +     +    I G      D+   N +  I    GN   DLV++DG+ DV G
Sbjct: 76  KPMIVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNEPADLVVSDGAPDVTG 131


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 253 TRRPRCWRKLLEIDKKFHVCRHVDTFLD 336
           TR  RC  +L E +K+    +H+ +F+D
Sbjct: 442 TREERCKNQLREYEKQMEYRKHLQSFID 469


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 537 DANLEYNIFIKHVTRFVGPRNGCEIFAFAHC-RFVHAH 427
           D+N+ Y +      R  G R G  +FA A C  F H H
Sbjct: 80  DSNMYYVLNTIRAKRVEGTRRGGSVFAMAICTTFPHVH 117


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 259 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPG 354
           R R   KL+++++K+         +DLC  PG
Sbjct: 26  RSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPG 57


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 392 QSGFNDMV*LANSPGPPHRSKNVST 318
           Q G + M+ ++NSPG PH +  V T
Sbjct: 347 QEGKSHMILISNSPGEPHGAIGVIT 371


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 275 RQHLGLRVGRLSNNFERAQ 219
           R+H+G  VGR  ++ ERAQ
Sbjct: 924 REHIGFYVGRTYHDLERAQ 942


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +3

Query: 273 AKTIRNRQKVSCLPTR*HVFGSVRRTGRVCQLYHVI-----EPALQSVRRHVDKQLGVRV 437
           A + RNRQ++S  P       SV  TG   QLY ++      P L ++R      +   +
Sbjct: 282 AASFRNRQQISHPPLGRTSSSSVLPTGPASQLYDMLSGRSERPELGNIREEDINTVQTIM 341

Query: 438 QTDSVQ 455
           QT   Q
Sbjct: 342 QTSRAQ 347


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 334  PKTCQRVGKHETFCRFLIVFANI*VCAL 251
            PK  ++V  H TF R  I    + VCA+
Sbjct: 1078 PKKARKVSGHTTFFRVGICLGKVLVCAV 1105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,569
Number of Sequences: 5004
Number of extensions: 49052
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)