Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26a19
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667...    33   0.17 
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260...    29   2.1  
03_05_0370 + 23541188-23542537                                         29   2.8  
03_02_0094 - 5583932-5584036,5584137-5584200,5584305-5584387,558...    28   6.5  
05_07_0367 - 29700855-29700920,29701092-29701149,29701446-297015...    27   8.6  

>06_03_1314 +
           29266320-29266346,29266463-29266556,29266663-29266712,
           29266798-29266847,29266945-29267053,29267135-29267195,
           29267291-29267343,29267629-29267721,29268091-29268166,
           29268401-29268508,29268596-29268840
          Length = 321

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
 Frame = +1

Query: 259 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVY 438
           R R   KLL+ID++F++   V   +DLC  PG ++   +S N    A             
Sbjct: 22  RARSAFKLLQIDQEFNIFHGVKRVVDLCAAPGSWSQ-VLSRNLYVPAKQSPDCKEGDLPL 80

Query: 439 KPTVCKRKNFTTITGP-DKSGDVFDKNVVFEISIKCGNAC--DLVLADGSVDVNG 594
              +   +    I G     GD+ +     E+ I+  + C  DLV+ DG+ DV G
Sbjct: 81  IVAI-DLQPMAPIEGVIQVQGDITNARTA-EVVIRHFDGCKADLVVCDGAPDVTG 133


>05_07_0148 +
           28024820-28025293,28025655-28025702,28026034-28026080,
           28026334-28026496,28026595-28026656,28026820-28027003,
           28027093-28027182,28027553-28027686,28027747-28027936,
           28028103-28029033,28029860-28030065
          Length = 842

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 259 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPL 390
           R R   KLL++D +F         LDLC  PG +    ++  P+
Sbjct: 23  RSRAAFKLLQLDARFRFLPTARAVLDLCAAPGGWVQVAVNHAPV 66


>03_05_0370 + 23541188-23542537
          Length = 449

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +1

Query: 199 FSSKSVVCARSKLFDKRPTRRPRCWRKLLEIDKKFHV--CRHVDTFLDLCGGPGEFANYT 372
           +++  +  A S+LFD+ PTR    W  LL     FH   C  V  F D+       A +T
Sbjct: 45  YANAGLPAAASRLFDEMPTRDAVAWNALLAC-LVFHARPCAAVAAFRDMA-----TAGFT 98

Query: 373 MSLNPLC 393
            +   LC
Sbjct: 99  PTATTLC 105


>03_02_0094 -
           5583932-5584036,5584137-5584200,5584305-5584387,
           5584523-5584588,5584711-5584801,5585259-5585392,
           5586219-5586413,5586886-5587015,5587873-5587958
          Length = 317

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 253 TRRPRCWRKLLEIDKKFHVCRHVDTFLDLCGGP 351
           T   RC  K+L+  KK  + R +    +LCGGP
Sbjct: 55  TNDERCIIKILKPVKKKKIKREIKILQNLCGGP 87


>05_07_0367 - 29700855-29700920,29701092-29701149,29701446-29701503,
            29701800-29701857,29702154-29702211,29702508-29702551,
            29702840-29703022,29703192-29703249,29703545-29703602,
            29703897-29703954,29704250-29704307,29704956-29705013,
            29705310-29705367,29705664-29705721,29706348-29706398,
            29706695-29706752,29707049-29707106,29707403-29707459,
            29707754-29707810,29708085-29708135,29708431-29708507,
            29708785-29708842,29709139-29709195,29709490-29709546,
            29709821-29709893,29710167-29710224,29710521-29710578,
            29710875-29710931,29711558-29711608,29711904-29711980,
            29712258-29712315,29712612-29712669,29712966-29713016,
            29713667-29713717,29714014-29714057,29714368-29714444,
            29714722-29714779,29715076-29715126,29715423-29715480,
            29715776-29715833,29716130-29716187,29716484-29716534,
            29716831-29716907,29717185-29717242,29717539-29717589,
            29718240-29718316,29718594-29718651,29718947-29719004,
            29719301-29719351,29719648-29719705,29723277-29723334,
            29723631-29723681,29724331-29724388,29724684-29724741,
            29725038-29725088,29725385-29725442,29725738-29725814,
            29726092-29726148,29726444-29726501,29726798-29726848,
            29727070-29727075
          Length = 1209

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = +1

Query: 256  RRPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGE---FANYTMSLNPLCKAYGVTLTNNS 426
            R  RC+   +   + F V         LC GP +   FA  T +  P+C+A+  TLT   
Sbjct: 988  RNNRCFVAYVVDPQIFDVSPKQPLLRGLCCGPSDIRRFAETTAASWPMCRAHQPTLTARL 1047

Query: 427  VCVYKPTVCK 456
            V      V K
Sbjct: 1048 VDALDTDVVK 1057


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,884,475
Number of Sequences: 37544
Number of extensions: 315284
Number of successful extensions: 782
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)