Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26a11
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 199 3e-52
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 91 1e-19
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 52 6e-08
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 26 4.2
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 26 4.2
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho... 26 5.6
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 5.6
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 7.4
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 199 bits (486), Expect = 3e-52
Identities = 93/124 (75%), Positives = 110/124 (88%)
Frame = +3
Query: 231 AVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADAEPLE 410
+VNPKA+PLAD+ LT +IL+LVQQA++YKQLRKGANEATKTLNRG+SE I+MAAD EP+E
Sbjct: 2 SVNPKAFPLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIE 61
Query: 411 IVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEIE 590
I+LH+P+LCEDKNVPYVFV SK ALGRACGVSRP+IS SIT NE S L PQIQ I+ IE
Sbjct: 62 ILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIE 121
Query: 591 RLLV 602
+LL+
Sbjct: 122 KLLI 125
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 91.1 bits (216), Expect = 1e-19
Identities = 41/107 (38%), Positives = 64/107 (59%)
Frame = +3
Query: 231 AVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADAEPLE 410
A+ P A PLA L K++ V++A+ K + +G E K + +G L+I+A D P++
Sbjct: 24 ALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMD 83
Query: 411 IVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQ 551
++ HIP+LCED NVPY++ SK+ LG A RP SC + + G +
Sbjct: 84 VISHIPVLCEDNNVPYLYTVSKELLGEASNTKRP-TSCVMIVPGGKK 129
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 52.4 bits (120), Expect = 6e-08
Identities = 25/95 (26%), Positives = 48/95 (50%)
Frame = +3
Query: 204 IVNMAETEAAVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELII 383
++N E A K +A+A A + + ++ G N + ++L++
Sbjct: 93 LLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVL 152
Query: 384 MAADAEPLEIVLHIPILCEDKNVPYVFVRSKQALG 488
+A+D +P+E+V+ +P LC+ VPY V++K LG
Sbjct: 153 IASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3
Query: 198 RGIVNMAETEAAVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSEL 377
RG+ N++ E P Y L D L K + + Y +G+N + + L RGL
Sbjct: 414 RGLQNLSLVEEI--PSLYSLTDTLLM-KAPSSGEANQLYTVCGRGSNSSLRQLRRGLETT 470
Query: 378 IIMAAD 395
I+A++
Sbjct: 471 EIVASE 476
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 294 VQQATNYKQLRKGANEATKTLNRGLSELIIMAADAEPLEIV 416
V++ N K R G N TKT ++ L + ++A+ LE++
Sbjct: 7 VKRYFNLKSSRIGMNPQTKTFEGAINRLNSLQSNAKVLEVL 47
>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
phospholipase C |Schizosaccharomyces pombe|chr
2|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 396 AEPLEIVLHIPILCEDKNVPYVFV 467
A+ L+ V H P CE KN VF+
Sbjct: 253 AKRLDYVFHSPSTCEAKNAKVVFL 276
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 268 AASANGYALGFTAASVSAMFTMP 200
A+ A GY L +TAA ++ T+P
Sbjct: 387 ASKATGYPLAYTAAKIALGHTLP 409
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 524 LDNHQ*GLTIKASDPNYSARNRKTISLSINRRVRKLFCVEYNILIK 661
L NH L +K+S+ NY+ R+ ISLSI V + L+K
Sbjct: 541 LSNHLYNLCVKSSNVNYA---RECISLSIKIAVSHKLTNDETYLLK 583
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,256
Number of Sequences: 5004
Number of extensions: 53683
Number of successful extensions: 113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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