Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26a11
         (663 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF208396-1|AAF20209.1|  127|Drosophila melanogaster Hoi-polloi p...   218   6e-57
AE014134-1677|AAF52798.2|  127|Drosophila melanogaster CG3949-PA...   218   6e-57
BT023752-1|AAZ41760.1|  160|Drosophila melanogaster RH66170p pro...    76   4e-14
AF217228-1|AAF27630.1|  160|Drosophila melanogaster nucleolar pr...    76   4e-14
AE014296-2434|AAF49701.1|  160|Drosophila melanogaster CG5258-PA...    76   4e-14
X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal prot...    56   3e-08
AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p pro...    56   6e-08
AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,...    56   6e-08
AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,...    56   6e-08
AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,...    56   6e-08
BT022435-1|AAY54851.1|  168|Drosophila melanogaster IP08031p pro...    29   7.5  
AE013599-3006|AAF57472.1|  168|Drosophila melanogaster CG16739-P...    29   7.5  
BT001727-1|AAN71482.1| 1019|Drosophila melanogaster RE69909p pro...    28   9.9  
AY051560-1|AAK92984.1|  312|Drosophila melanogaster GH20986p pro...    28   9.9  
AE014297-2958|AAF55867.1| 1019|Drosophila melanogaster CG5871-PA...    28   9.9  

>AF208396-1|AAF20209.1|  127|Drosophila melanogaster Hoi-polloi
           protein.
          Length = 127

 Score =  218 bits (532), Expect = 6e-57
 Identities = 99/123 (80%), Positives = 116/123 (94%)
 Frame = +3

Query: 234 VNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADAEPLEI 413
           VNPKA+PLADA LTAKI+NL+QQA NY QLRKGANEATKTLNRGL++++++A DAEP+EI
Sbjct: 5   VNPKAFPLADAQLTAKIMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEPIEI 64

Query: 414 VLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEIER 593
           +LH+P+LCEDKNVPYVFVRSKQALGRACGVSRPI++CS+T NEGSQLK QI +IQQEIER
Sbjct: 65  LLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIVACSVTTNEGSQLKSQITSIQQEIER 124

Query: 594 LLV 602
           LLV
Sbjct: 125 LLV 127


>AE014134-1677|AAF52798.2|  127|Drosophila melanogaster CG3949-PA
           protein.
          Length = 127

 Score =  218 bits (532), Expect = 6e-57
 Identities = 99/123 (80%), Positives = 116/123 (94%)
 Frame = +3

Query: 234 VNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADAEPLEI 413
           VNPKA+PLADA LTAKI+NL+QQA NY QLRKGANEATKTLNRGL++++++A DAEP+EI
Sbjct: 5   VNPKAFPLADAQLTAKIMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEPIEI 64

Query: 414 VLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEIER 593
           +LH+P+LCEDKNVPYVFVRSKQALGRACGVSRPI++CS+T NEGSQLK QI +IQQEIER
Sbjct: 65  LLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIVACSVTTNEGSQLKSQITSIQQEIER 124

Query: 594 LLV 602
           LLV
Sbjct: 125 LLV 127


>BT023752-1|AAZ41760.1|  160|Drosophila melanogaster RH66170p
           protein.
          Length = 160

 Score = 76.2 bits (179), Expect = 4e-14
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
 Frame = +3

Query: 234 VNPKAYPLADAALTAKILNLVQQATNYKQ-LRKGANEATKTLNRGLSELIIMAADAEPLE 410
           VN  A P+A   L  K   LV++A  +K  LR G  +    L +G + + I A D  P++
Sbjct: 37  VNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVD 96

Query: 411 IVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEIE 590
           I+ H+P +CE+K +PY +  S+  LG A GV R  ++  +  NE  + K     +++E+ 
Sbjct: 97  IMCHLPAVCEEKGIPYTYTPSRADLGAAMGVKRGTVALLVRQNE--EYKDLYDEVKEELS 154

Query: 591 RL 596
            L
Sbjct: 155 AL 156


>AF217228-1|AAF27630.1|  160|Drosophila melanogaster nucleolar
           protein NHP2 protein.
          Length = 160

 Score = 76.2 bits (179), Expect = 4e-14
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
 Frame = +3

Query: 234 VNPKAYPLADAALTAKILNLVQQATNYKQ-LRKGANEATKTLNRGLSELIIMAADAEPLE 410
           VN  A P+A   L  K   LV++A  +K  LR G  +    L +G + + I A D  P++
Sbjct: 37  VNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVD 96

Query: 411 IVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEIE 590
           I+ H+P +CE+K +PY +  S+  LG A GV R  ++  +  NE  + K     +++E+ 
Sbjct: 97  IMCHLPAVCEEKGIPYTYTPSRADLGAAMGVKRGTVALLVRQNE--EYKDLYDEVKEELS 154

Query: 591 RL 596
            L
Sbjct: 155 AL 156


>AE014296-2434|AAF49701.1|  160|Drosophila melanogaster CG5258-PA
           protein.
          Length = 160

 Score = 76.2 bits (179), Expect = 4e-14
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
 Frame = +3

Query: 234 VNPKAYPLADAALTAKILNLVQQATNYKQ-LRKGANEATKTLNRGLSELIIMAADAEPLE 410
           VN  A P+A   L  K   LV++A  +K  LR G  +    L +G + + I A D  P++
Sbjct: 37  VNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVD 96

Query: 411 IVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEIE 590
           I+ H+P +CE+K +PY +  S+  LG A GV R  ++  +  NE  + K     +++E+ 
Sbjct: 97  IMCHLPAVCEEKGIPYTYTPSRADLGAAMGVKRGTVALLVRQNE--EYKDLYDEVKEELS 154

Query: 591 RL 596
            L
Sbjct: 155 AL 156


>X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal protein
           L7a protein.
          Length = 271

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 30/91 (32%), Positives = 47/91 (51%)
 Frame = +3

Query: 219 ETEAAVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADA 398
           E+  A N +   +A+A    K    V+       +  G N  TK + +  ++L+++A D 
Sbjct: 110 ESALAKNVRLKKIAEAKAKGKD---VEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDV 166

Query: 399 EPLEIVLHIPILCEDKNVPYVFVRSKQALGR 491
           +PLE+VL +P LC    VPY  V+ K  LGR
Sbjct: 167 DPLELVLFLPALCRKMGVPYCIVKGKARLGR 197


>AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p
           protein.
          Length = 271

 Score = 55.6 bits (128), Expect = 6e-08
 Identities = 23/54 (42%), Positives = 34/54 (62%)
 Frame = +3

Query: 330 GANEATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDKNVPYVFVRSKQALGR 491
           G N  TK + +  ++L+++A D +PLE+VL +P LC    VPY  V+ K  LGR
Sbjct: 144 GTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGR 197


>AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,
           isoform D protein.
          Length = 271

 Score = 55.6 bits (128), Expect = 6e-08
 Identities = 23/54 (42%), Positives = 34/54 (62%)
 Frame = +3

Query: 330 GANEATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDKNVPYVFVRSKQALGR 491
           G N  TK + +  ++L+++A D +PLE+VL +P LC    VPY  V+ K  LGR
Sbjct: 144 GTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGR 197


>AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,
           isoform C protein.
          Length = 271

 Score = 55.6 bits (128), Expect = 6e-08
 Identities = 23/54 (42%), Positives = 34/54 (62%)
 Frame = +3

Query: 330 GANEATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDKNVPYVFVRSKQALGR 491
           G N  TK + +  ++L+++A D +PLE+VL +P LC    VPY  V+ K  LGR
Sbjct: 144 GTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGR 197


>AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,
           isoform A protein.
          Length = 271

 Score = 55.6 bits (128), Expect = 6e-08
 Identities = 23/54 (42%), Positives = 34/54 (62%)
 Frame = +3

Query: 330 GANEATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDKNVPYVFVRSKQALGR 491
           G N  TK + +  ++L+++A D +PLE+VL +P LC    VPY  V+ K  LGR
Sbjct: 144 GTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGR 197


>BT022435-1|AAY54851.1|  168|Drosophila melanogaster IP08031p
           protein.
          Length = 168

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 345 WPRSRLYEVACNW*LVAPSSGF*RLRRHPPMG 250
           WP++R+   AC   L A  + F RL + PP G
Sbjct: 66  WPKTRIRPQACLGLLYATGNRFIRLTKAPPAG 97


>AE013599-3006|AAF57472.1|  168|Drosophila melanogaster CG16739-PA
           protein.
          Length = 168

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 345 WPRSRLYEVACNW*LVAPSSGF*RLRRHPPMG 250
           WP++R+   AC   L A  + F RL + PP G
Sbjct: 66  WPKTRIRPQACLGLLYATGNRFIRLTKAPPAG 97


>BT001727-1|AAN71482.1| 1019|Drosophila melanogaster RE69909p protein.
          Length = 1019

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 416  NNFERFGICCHYDELRQTTIKRLCGLVRAFTKLLVIGSLLHQVQDFSG*GGIRQ 255
            N F R    C Y ELR+   + +C L      + ++ SL+    D SG G + Q
Sbjct: 880  NIFRRNLELCWYTELREKYSRDICPLEGGEEVVQLVTSLVESYHDSSGNGALDQ 933


>AY051560-1|AAK92984.1|  312|Drosophila melanogaster GH20986p
           protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 416 NNFERFGICCHYDELRQTTIKRLCGLVRAFTKLLVIGSLLHQVQDFSG*GGIRQ 255
           N F R    C Y ELR+   + +C L      + ++ SL+    D SG G + Q
Sbjct: 173 NIFRRNLELCWYTELREKYSRDICPLEGGEEVVQLVTSLVESYHDSSGNGALDQ 226


>AE014297-2958|AAF55867.1| 1019|Drosophila melanogaster CG5871-PA
            protein.
          Length = 1019

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 416  NNFERFGICCHYDELRQTTIKRLCGLVRAFTKLLVIGSLLHQVQDFSG*GGIRQ 255
            N F R    C Y ELR+   + +C L      + ++ SL+    D SG G + Q
Sbjct: 880  NIFRRNLELCWYTELREKYSRDICPLEGGEEVVQLVTSLVESYHDSSGNGALDQ 933


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,813,617
Number of Sequences: 53049
Number of extensions: 618323
Number of successful extensions: 1285
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2848092300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)