Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26a10
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch...    30   0.32 
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    28   0.97 
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    28   1.3  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    26   5.2  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.2  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   6.8  

>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 7/127 (5%)
 Frame = +2

Query: 239 THSFKYRYVHNDTNAKFYNXIDFCKGLEIAHDD-ILDCNW----DSDQVYHLNEIIFHKQ 403
           TH  +     N+   +F   +D    LEI  +  +    W      +Q   LN ++    
Sbjct: 63  THLNEEEIRTNERVKRFQRRVDEWTALEIERESQVQPPLWYQRDREEQNRTLNFLMSGMA 122

Query: 404 KSKRDLNSLGALFATKQGLLKILMR--LNFDNKSNALLHLQTEGERDDLRDKIESVLKHV 577
             +R +N++     T QG +  +    +NF NK N L       E  DLR K   V+  V
Sbjct: 123 DLQRTINTMQGTMNTMQGTMNTMQENMINFTNKVNTLDMRSVRAENRDLR-KGAYVISPV 181

Query: 578 KKLNTNS 598
             +N N+
Sbjct: 182 PFINGNN 188


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 14/71 (19%), Positives = 33/71 (46%)
 Frame = +2

Query: 389 IFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 568
           I  ++++  D  SL         ++ ++   NF +++    H  ++  + +LR   + + 
Sbjct: 247 IIDQEETSSDDESLSKEIVNSNPIMCMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIK 306

Query: 569 KHVKKLNTNSE 601
           KH K+   N+E
Sbjct: 307 KHAKEAQKNAE 317


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 383 EIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSN 502
           ++ FH Q+ KRD+ +L  ++ T    L  L+   F + +N
Sbjct: 79  QLEFHAQEGKRDVTNLTCVYGTSPQQLDRLITREFSSDAN 118


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 18/85 (21%), Positives = 37/85 (43%)
 Frame = +2

Query: 251 KYRYVHNDTNAKFYNXIDFCKGLEIAHDDILDCNWDSDQVYHLNEIIFHKQKSKRDLNSL 430
           K   +  +T     + +D  KGL+  +D       +    YH+N  +F+ +      +++
Sbjct: 423 KVNALPEETTLAVNHRVDASKGLKQVYDRYGGLLEEFGHEYHVNVTLFNGETVVEYEDAI 482

Query: 431 GALFATKQGLLKILMRLNFDNKSNA 505
           G +FA+    L+      +D  S+A
Sbjct: 483 GHIFASTAKTLEPSPVSPYDESSDA 507


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -1

Query: 443 RTMRPTS*DRVWISACEK*FRLN--GKLDR---CPNCNQVCRRAQFQDLCKNL 300
           RT +P   D +W +AC++   +N   K  R    P C Q+C  +Q  D   NL
Sbjct: 81  RTCQPKQHDSIWCTACQQTKGINEFSKAQRHVLDPRC-QICVHSQRNDGDDNL 132


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +2

Query: 419  LNSLGALFA-TKQGLLKI----LMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 568
            + S G L A T+ G+ +     LMR +F+     L+     GE+DD +   E+++
Sbjct: 1381 MTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIM 1435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,463
Number of Sequences: 5004
Number of extensions: 36784
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)