Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26a10
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032... 31 0.57
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 29 2.3
01_06_1034 + 33962813-33963802 29 3.0
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512 29 4.0
03_02_0628 + 9957385-9957888,9957985-9958111,9958541-9958608,995... 28 5.3
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 28 7.0
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 28 7.0
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440... 27 9.3
>04_03_0686 +
18701543-18701917,18702658-18702702,18703175-18703289,
18703644-18703713,18703796-18703844,18704319-18704416,
18704984-18705122,18705261-18705410
Length = 346
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 281 AKFYNXIDFCKGLE-IAHDDILDCNWD 358
A+FYN C +E IAHD +LDC+WD
Sbjct: 306 ARFYNVQPVC--IEGIAHDMMLDCSWD 330
>02_03_0026 -
14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 575 HVLKQIQFCRANHHARLQFEGAATRCFCCQ 486
H+LK++ C+ +H R QFE FCC+
Sbjct: 243 HLLKKVPDCKHSHAIRFQFESPG---FCCR 269
>01_06_1034 + 33962813-33963802
Length = 329
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 410 WISACEK*FRLNGKLDRCPNCN 345
W AC + R++G+ CPNCN
Sbjct: 8 WCYACRRPIRVSGQDITCPNCN 29
>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
Length = 957
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 353 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR 478
+D D + LNE++ ++K K+DL L+ K L ++ R
Sbjct: 660 YDQDALERLNELVVKREKEKQDLERELELYRRKVHLFEVKER 701
>03_02_0628 +
9957385-9957888,9957985-9958111,9958541-9958608,
9958695-9958772,9958885-9958949,9959130-9959196,
9959344-9959526,9959690-9959746,9959857-9959952,
9960061-9960219
Length = 467
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +2
Query: 392 FHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNK--SNALLHLQTEGE--RDDLRDKIE 559
+HK ++RD L + A K+ L + NK + TEG+ R +L DK
Sbjct: 196 YHKVVAERDAGKLLSSIAVKEKLESLCREFQRQNKMLKEECRRVSTEGQNMRMELSDKFN 255
Query: 560 SVLKHVK-KLNTNSEKFMVXXE 622
+ +K V KL+ + + E
Sbjct: 256 NAIKDVSVKLDEQKNECIAQLE 277
>07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = -2
Query: 403 LLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYXIVEFCVRVVVHV 260
LL+ + ++NL+ V I Y + ++++ ++ + F V+VH+
Sbjct: 985 LLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHL 1032
>03_06_0389 - 33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = -2
Query: 403 LLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYXIVEFCVRVVVHV 260
LL+ + ++NL+ V I Y + ++++ ++ + F V+VH+
Sbjct: 971 LLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHL 1018
>09_04_0684 -
19442335-19442990,19443774-19443839,19443935-19444032,
19444787-19445157
Length = 396
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 512 AATRCFCCQNLTASKFSTTPAWSRTMRPTS*DRVWISACE 393
AA RCF Q T+S ++P WS RP + + + C+
Sbjct: 49 AAARCFATQPATSSLRDSSPNWSN--RPPK-ETILLDGCD 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,608,369
Number of Sequences: 37544
Number of extensions: 217934
Number of successful extensions: 546
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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