Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26a06
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    81   2e-16
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    58   1e-09
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    43   4e-05
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    39   6e-04
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    35   0.010
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.16 
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...    29   0.85 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.0  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    27   2.6  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    27   3.4  
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    26   4.5  
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    25   7.9  

>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 44/145 (30%), Positives = 72/145 (49%)
 Frame = +2

Query: 242 DTELLDAAGPSLKVVATISVGHDHIDVAECKKRGVRIGYTPDVXXXXXXXXXXXXXXXXS 421
           D E++D   PS+K +  +  G++ +DVA C  RG+++ + P                   
Sbjct: 70  DKEIIDNLPPSVKFICHLGAGYETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGAL 129

Query: 422 RRVPEAIHEAKTGGWVSWAPTWMTGPGLAGATVGIVGFGRIGQAVARRVKAFNTERIIYF 601
           R   + I E       +W           G T+GI+G G IG+ +A+R +AF+  +I+Y 
Sbjct: 130 RGFNQGIFELHKN---NWNANCKPSHDPEGKTLGILGLGGIGKTMAKRARAFDM-KIVYH 185

Query: 602 NRSHRPEEKETGAVXVSFXELLTQA 676
           NR+  PEE+  GA  VSF +LL ++
Sbjct: 186 NRTPLPEEEAEGAEFVSFDDLLAKS 210


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 2/145 (1%)
 Frame = +2

Query: 248 ELLDAAGPSLKVVATISVGHDHIDVAECKKRGVRIGYTPDVXXXXXXXXXXXXXXXXSRR 427
           E+L    P+ K+  T + G++++DV    + GV +  TP+                  R 
Sbjct: 75  EMLGPLLPTCKLFVTGAAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRG 134

Query: 428 VPEAIHEAKTGGWVSWAPTWMTGPGLAGATVGIVGFGRIGQAVARRVKAFNTERIIYFNR 607
             EA    + G    W           G  VGI+G G IG++ A+++     E I+Y NR
Sbjct: 135 AREAEQSLRLG---KWRQNLSLTDDPYGKRVGIIGMGAIGKSFAQKILPLGCE-IVYHNR 190

Query: 608 S--HRPEEKETGAVXVSFXELLTQA 676
           +     EEK  GA  VSF ELL+ +
Sbjct: 191 NRLEAEEEKRLGASFVSFDELLSSS 215


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
 Frame = +2

Query: 182 ELLKEVAGVNGIYCSLTDKIDTELLDAAGPSLKVVATISVGHDHIDVAECKKRGVRIGYT 361
           +L++++ GV+ I      ++   +L+AA  SL V+    +G + +D+    +RG+ +  +
Sbjct: 90  DLVEKIKGVHAIGIRSKTRLTRRVLEAAD-SLIVIGCFCIGTNQVDLDFAAERGIAVFNS 148

Query: 362 PDVXXXXXXXXXXXXXXXXSRRVPEAIHEAKTGGWVSWAP-TWMTGPGLAGATVGIVGFG 538
           P                  +R+V +   E   G W   +   W     + G T+GI+G+G
Sbjct: 149 PYANSRSVAELVIGYIISLARQVGDRSLELHRGEWNKVSSGCWE----IRGKTLGIIGYG 204

Query: 539 RIGQAVARRVKAFNTERIIY 598
            IG  ++   +A     + Y
Sbjct: 205 HIGSQLSVLAEAMGLHVVYY 224


>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 2/169 (1%)
 Frame = +2

Query: 176 RAELLKEVAGVNGIYCSLTDKIDTELLDA-AGPSLKVVATISVGHDHIDVAECKKRGVRI 352
           +  +L E A V  ++  + DK+D + L   A    K++A    G +++D+      G+ +
Sbjct: 37  KTAVLAEKAPVVCVF--VNDKVDADTLKVLAKNGTKLIALRCAGFNNVDLKAAADNGITV 94

Query: 353 GYTPDVXXXXXXXXXXXXXXXXSRRVPEAIHEAKTGGWVSWAPTWMTGPGLAGATVGIVG 532
              P                  +R++  A    +      +    + G  L G T+G++G
Sbjct: 95  VRVPAYSPYAVAEYTIGLLLSLNRKIHRAYVRVRED---DFNLNGLLGHDLHGKTIGLLG 151

Query: 533 FGRIGQAVARRVK-AFNTERIIYFNRSHRPEEKETGAVXVSFXELLTQA 676
            GRIG  VA+ +K  F  E + +  + ++  EK  G   V   E+L +A
Sbjct: 152 TGRIGGLVAKCLKLGFGCEVLAHDIKPNKELEK-FGIQFVEQQEVLAKA 199


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 29/137 (21%), Positives = 60/137 (43%), Gaps = 3/137 (2%)
 Frame = +2

Query: 197 VAGVNGIYCS-LTDKIDTELLDA-AGPSLKVVATISVGHDHIDVAECKKRGVRIGYTPDV 370
           +AG   + C  + D++D + L A A   +K+VA    G++++++    +  + + + P  
Sbjct: 41  LAGKAQVVCVFVNDQVDADTLKALAENGVKLVALRCGGYNNVNLKAASEYKITVVHVPSY 100

Query: 371 XXXXXXXXXXXXXXXXSRRVPEAIHEAKTGGWVSWAPTWMTGPGLAGATVGIVGFGRIGQ 550
                           +R++  A    +      +    + G  + G TVG++G G+IG 
Sbjct: 101 SPFAVSEFTVGLLLSLNRKIHRAYVRVRED---DFNIVGLLGCDIHGKTVGVIGTGKIGS 157

Query: 551 AVARRVK-AFNTERIIY 598
            VA+  K  F  + + Y
Sbjct: 158 NVAKCFKMGFGCDVLAY 174


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = -3

Query: 531 PTMPTVAPASP-GPVIQVGAHETQPPVLASCIASGTRRDVAKSR-ARVNSAVASVKTSGV 358
           P  P  APA+P   + ++   + +  ++AS  ASG   D+ KSR    + +VAS KTS  
Sbjct: 477 PPAPAPAPAAPVASIAELPQQDGRANLMASIRASGGM-DLLKSRKVSASPSVASTKTSNP 535

Query: 357 YPIRTP 340
            P+  P
Sbjct: 536 -PVEAP 540


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 518 VGIVGFGRIGQAVARRVKAFNTERIIYFN 604
           VGI GFGRIG+ V R      T +++  N
Sbjct: 6   VGINGFGRIGRIVLRNALVAKTIQVVAIN 34


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 23/94 (24%), Positives = 47/94 (50%)
 Frame = -3

Query: 456 VLASCIASGTRRDVAKSRARVNSAVASVKTSGVYPIRTPLFLHSATSI*SWPTEIVATTF 277
           +L+S  +S +   ++ S +  +S  +S  TS    I + +   S+++I S PT   ++  
Sbjct: 579 ILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSI--SSSSTILSSPTPSTSSLM 636

Query: 276 KLGPAASNSSVSILSVKEQ*IPLTPATSFNNSAL 175
               +  + S SILS     IP++ + S  +S++
Sbjct: 637 ISSSSIISGSSSILSSSISTIPISSSLSTYSSSV 670


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 28  SWWYCYCKEHECKRTISNIRDEV--*YAREWST 120
           S+ YC C++ E +++I +I +E+   Y + W T
Sbjct: 159 SFCYCSCEQKEWQQSIKSIEEELVEKYQQSWKT 191


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 125 LKDQCDVNLWNQPSPVPRAELLKEVAGVNGIYCSLTDKIDTELLDAA 265
           + D C +NLW+  +      LL+EVAG N     L +K+ T  ++ A
Sbjct: 201 ISDVCGMNLWDIQNEKFDIRLLEEVAG-NSKGPDLANKLGTVEINGA 246


>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
 Frame = +1

Query: 469 FMGTHLDDRTWTGRCHCWHCWI--W--ENRSGSST 561
           F    L+D TW  +   W  WI  W  ENR  S T
Sbjct: 12  FFTRQLNDNTWHSQKAAWQMWILLWCRENRQTSIT 46


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 506 AGATVGIVGFGRIGQAVARRVKAFNTERII 595
           +G+TV +VG G +G A  +   A    RII
Sbjct: 193 SGSTVAVVGCGCVGLAAMQGAVAAGASRII 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,293
Number of Sequences: 5004
Number of extensions: 63809
Number of successful extensions: 172
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)