Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26a06
(701 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83219-1|CAB05694.1| 322|Caenorhabditis elegans Hypothetical pr... 63 2e-10
U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical pr... 39 0.004
U88172-5|AAB42260.1| 483|Caenorhabditis elegans Hypothetical pr... 32 0.46
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 31 0.80
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 31 0.80
Z49070-2|CAA88870.1| 341|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z48783-3|CAA88697.1| 341|Caenorhabditis elegans Hypothetical pr... 30 1.8
X52674-1|CAA36900.1| 341|Caenorhabditis elegans gpd-1 protein. 30 1.8
X52673-1|CAA36899.1| 341|Caenorhabditis elegans gpd-4 protein. 30 1.8
X04818-1|CAA28504.1| 341|Caenorhabditis elegans glyceraldehyde-... 30 1.8
Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical pr... 29 2.4
AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPas... 29 2.4
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81055-11|CAB02899.2| 384|Caenorhabditis elegans Hypothetical p... 29 4.3
Z73427-4|CAA97802.3| 601|Caenorhabditis elegans Hypothetical pr... 29 4.3
AL022716-6|CAA18774.2| 384|Caenorhabditis elegans Hypothetical ... 29 4.3
Z83129-2|CAB63327.1| 318|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 27 9.8
U58756-6|AAY44007.1| 286|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical... 27 9.8
AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical... 27 9.8
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 27 9.8
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 27 9.8
>Z83219-1|CAB05694.1| 322|Caenorhabditis elegans Hypothetical
protein C31C9.2 protein.
Length = 322
Score = 62.9 bits (146), Expect = 2e-10
Identities = 48/166 (28%), Positives = 71/166 (42%), Gaps = 1/166 (0%)
Frame = +2
Query: 182 ELLKEVAGVNGIYCSLTDKIDTELLDAAGPSLKVVATISVGHDHIDVAECKKRGVRIGYT 361
ELL + + + KI ELL A+ LK+V G D+IDV + + T
Sbjct: 39 ELLVTLPQHDAVIVRSATKITAELLAASAGKLKLVGRAGTGVDNIDVPAASANKILVMNT 98
Query: 362 PDVXXXXXXXXXXXXXXXXSRRVPEAIHEAKTGGWVSWAPTWMTGPGLAGATVGIVGFGR 541
P SR VP+A K G WA G + G T+ ++G GR
Sbjct: 99 PQANSRSAAELTCTLILSLSRHVPQAAASMKAG---KWARKDFMGEEVYGRTLAVLGLGR 155
Query: 542 IGQAVARRVKAFNTERIIYFNRSHRPEEKETGAV-XVSFXELLTQA 676
IG VA R++AF ++I F+ E+ E + +S ++ QA
Sbjct: 156 IGSEVAVRLQAFGM-KVIGFDPMVTKEQAEAKNIELLSLEQIWPQA 200
>U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical
protein F49E10.5 protein.
Length = 727
Score = 38.7 bits (86), Expect = 0.004
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Frame = +2
Query: 275 LKVVATISVGHDHIDVAECKKRGVRIGYTPDVXXXXXXXXXXXXXXXXSRRV---PEAIH 445
LKVV I G D+IDV + G+ + + P RR ++
Sbjct: 243 LKVVFRIGYGIDNIDVKAATELGIAVCHAPGDYVEDVADSTLSLILDLFRRTYWHAKSYS 302
Query: 446 EA-KTGGWVSWAPTWMTGPGLAGATVGIVGFGRIGQAVARRVKAFNTERIIY 598
E KT G + + G+ +GI+G GR+G AV R +AF I Y
Sbjct: 303 ETRKTIGADQVRENAVGSKKVRGSVLGILGCGRVGTAVGLRARAFGLHIIFY 354
>U88172-5|AAB42260.1| 483|Caenorhabditis elegans Hypothetical
protein ZK354.8 protein.
Length = 483
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -3
Query: 546 PILPNPTMPTVAPASPGPVIQVGAHETQPPVLAS 445
P P P P VAP P P + A QPPV+ S
Sbjct: 94 PSDPPPPPPPVAPHQPPPQLATSAQPPQPPVINS 127
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 31.1 bits (67), Expect = 0.80
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 546 PILPNPTMPTVAPASPGPVIQVGAHETQPPVLASCIASGTRRD-VAKSRARVNSAVASVK 370
P P P T+ P G++ QP VL SC T + AK A V + +A ++
Sbjct: 158 PAPPPPIQKTMQPIEVKIEDSEGSNTAQPSVLPSCGGGETNVERAAKREAHVLARIAELR 217
Query: 369 TSGVY 355
+G++
Sbjct: 218 KNGLW 222
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 31.1 bits (67), Expect = 0.80
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 546 PILPNPTMPTVAPASPGPVIQVGAHETQPPVLASCIASGTRRD-VAKSRARVNSAVASVK 370
P P P T+ P G++ QP VL SC T + AK A V + +A ++
Sbjct: 158 PAPPPPIQKTMQPIEVKIEDSEGSNTAQPSVLPSCGGGETNVERAAKREAHVLARIAELR 217
Query: 369 TSGVY 355
+G++
Sbjct: 218 KNGLW 222
>Z49070-2|CAA88870.1| 341|Caenorhabditis elegans Hypothetical
protein T09F3.3 protein.
Length = 341
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 503 LAGATVGIVGFGRIGQAVARRVKAFNTERIIYFN 604
++ A VGI GFGRIG+ V R +T +++ N
Sbjct: 1 MSKANVGINGFGRIGRLVLRAAVEKDTVQVVAVN 34
>Z48783-3|CAA88697.1| 341|Caenorhabditis elegans Hypothetical
protein F33H1.2 protein.
Length = 341
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 503 LAGATVGIVGFGRIGQAVARRVKAFNTERIIYFN 604
++ A VGI GFGRIG+ V R +T +++ N
Sbjct: 1 MSKANVGINGFGRIGRLVLRAAVEKDTVQVVAVN 34
>X52674-1|CAA36900.1| 341|Caenorhabditis elegans gpd-1 protein.
Length = 341
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 503 LAGATVGIVGFGRIGQAVARRVKAFNTERIIYFN 604
++ A VGI GFGRIG+ V R +T +++ N
Sbjct: 1 MSKANVGINGFGRIGRLVLRAAVEKDTVQVVAVN 34
>X52673-1|CAA36899.1| 341|Caenorhabditis elegans gpd-4 protein.
Length = 341
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 503 LAGATVGIVGFGRIGQAVARRVKAFNTERIIYFN 604
++ A VGI GFGRIG+ V R +T +++ N
Sbjct: 1 MSKANVGINGFGRIGRLVLRAAVEKDTVQVVAVN 34
>X04818-1|CAA28504.1| 341|Caenorhabditis elegans
glyceraldehyde-3-phosphate dehydrogenaseprotein.
Length = 341
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 503 LAGATVGIVGFGRIGQAVARRVKAFNTERIIYFN 604
++ A VGI GFGRIG+ V R +T +++ N
Sbjct: 1 MSKANVGINGFGRIGRLVLRAAVEKDTVQVVAVN 34
>Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical
protein K11D9.2b protein.
Length = 1004
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = -3
Query: 471 ETQPPVLASCIASGTRRDVAKSRARVNSAVASVKTSG 361
E P V+ +C+A GTRR +AK A V S + SV+T G
Sbjct: 311 EGLPAVITTCLALGTRR-MAKKNAIVRS-LPSVETLG 345
>Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical
protein K11D9.2a protein.
Length = 1059
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = -3
Query: 471 ETQPPVLASCIASGTRRDVAKSRARVNSAVASVKTSG 361
E P V+ +C+A GTRR +AK A V S + SV+T G
Sbjct: 311 EGLPAVITTCLALGTRR-MAKKNAIVRS-LPSVETLG 345
>AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPase
protein.
Length = 1059
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = -3
Query: 471 ETQPPVLASCIASGTRRDVAKSRARVNSAVASVKTSG 361
E P V+ +C+A GTRR +AK A V S + SV+T G
Sbjct: 311 EGLPAVITTCLALGTRR-MAKKNAIVRS-LPSVETLG 345
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 29.1 bits (62), Expect = 3.2
Identities = 28/104 (26%), Positives = 34/104 (32%), Gaps = 4/104 (3%)
Frame = -3
Query: 546 PILPNPTMPTVAPASPGPVIQVGAHETQPPVLASCIASG---TRRDVAKSRARVNSAVAS 376
P P P P V PA P P + T PP+ G T + V + +
Sbjct: 75 PSAPGPIRPVVNPAPPLPTLPTPPPSTLPPITYPRPTVGAPITTQQVLITETTTQPPTTT 134
Query: 375 VKTSGVYPIRTPLFLHSATSI*SWPTEIVATTFK-LGPAASNSS 247
P TP S T P VA T K L P +S
Sbjct: 135 TTLETPAPESTPSMAPSHTDPTPAPETTVAPTTKYLRPERKQTS 178
>Z81055-11|CAB02899.2| 384|Caenorhabditis elegans Hypothetical
protein C24F3.3 protein.
Length = 384
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 377 QSKHPECTQYGHPFSCTLPHRYD 309
+ KHP C Y H CTLP YD
Sbjct: 349 EDKHPRCDIYSHNGFCTLPF-YD 370
>Z73427-4|CAA97802.3| 601|Caenorhabditis elegans Hypothetical
protein F58B3.4 protein.
Length = 601
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 14 TSDLFRGGIAIVRNMSAKGRYQIYVTRSDMPESGVQLLKDQCDVNLWNQPSPV 172
+S F+G + + + K + V + PE VQ LK Q D WN+ V
Sbjct: 549 SSKKFKGSLLVTKQAEQKSKGSSTVIETKKPEDLVQKLKKQAD--KWNKKKSV 599
>AL022716-6|CAA18774.2| 384|Caenorhabditis elegans Hypothetical
protein C24F3.3 protein.
Length = 384
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 377 QSKHPECTQYGHPFSCTLPHRYD 309
+ KHP C Y H CTLP YD
Sbjct: 349 EDKHPRCDIYSHNGFCTLPF-YD 370
>Z83129-2|CAB63327.1| 318|Caenorhabditis elegans Hypothetical
protein W06G6.3 protein.
Length = 318
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 462 PPVLASCIASGTRRDVAKSRARVNSAVASVKTSGVY 355
PP CIA+ R V K + ++NS V +V + ++
Sbjct: 282 PPFFKFCIANPGRMAVRKIKGKMNSEVTAVTSYSIH 317
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 568 HPSCYCLTYSPKSNNANSGTGQSRSCHPS 482
HP + SP N N+ SRSCHP+
Sbjct: 1926 HPQISGESCSPCQCNGNNNLTDSRSCHPN 1954
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 568 HPSCYCLTYSPKSNNANSGTGQSRSCHPS 482
HP + SP N N+ SRSCHP+
Sbjct: 1926 HPQISGESCSPCQCNGNNNLTDSRSCHPN 1954
>U58756-6|AAY44007.1| 286|Caenorhabditis elegans Hypothetical
protein F58F9.9 protein.
Length = 286
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -2
Query: 544 YSPKSNNANSGTGQSRSC--HPSGCP-*NPTT 458
Y P SNN + +SR C PSGCP NPTT
Sbjct: 134 YKPNSNN--TAYVRSRKCLSGPSGCPCVNPTT 163
>AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 634 SFLLFRSMTAIKINDSFCVECFHPSCYCLTYSPKSNNANSGTGQSR 497
SF+L +++ + D C++C S YC T+ + + G +R
Sbjct: 4 SFILTFTISVVAAFDDECIKCDLRSSYCKTWENSTQSCECRDGFAR 49
>AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 634 SFLLFRSMTAIKINDSFCVECFHPSCYCLTYSPKSNNANSGTGQSR 497
SF+L +++ + D C++C S YC T+ + + G +R
Sbjct: 4 SFILTFTISVVAAFDDECIKCDLRSSYCKTWENSTQSCECRDGFAR 49
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 568 HPSCYCLTYSPKSNNANSGTGQSRSCHPS 482
HP + SP N N+ SRSCHP+
Sbjct: 1926 HPQISGESCSPCQCNGNNNLTDSRSCHPN 1954
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 568 HPSCYCLTYSPKSNNANSGTGQSRSCHPS 482
HP + SP N N+ SRSCHP+
Sbjct: 1926 HPQISGESCSPCQCNGNNNLTDSRSCHPN 1954
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,057,171
Number of Sequences: 27780
Number of extensions: 371982
Number of successful extensions: 1090
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -