Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26a06
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    24   1.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.6  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 548 DLFSQIQQCQQWHRPVQV 495
           DL  QIQQC ++  PV V
Sbjct: 71  DLMYQIQQCGKFKEPVAV 88


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 282 LWLLFLWAMIISMWQSARKGVSVLGTLRM 368
           +WL F+W      W  A  G   +G LR+
Sbjct: 77  VWLRFIWTDYQLQWDEADYG--GIGVLRL 103


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = +2

Query: 425 RVPEAIHEAKTGGWVSWAPTWMTGPGLAGATVGIVGF 535
           +VP  +       W  + P      G+ G  +G++GF
Sbjct: 28  KVPPDMLHLIDANWYQYPPLNPMWHGILGFVIGMLGF 64


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 408 SWLHHVEFLKLYMKPKPVV 464
           SW H+V  + LY   +P++
Sbjct: 162 SWTHNVLDMVLYWDQEPII 180


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/56 (17%), Positives = 22/56 (39%)
 Frame = -3

Query: 531 PTMPTVAPASPGPVIQVGAHETQPPVLASCIASGTRRDVAKSRARVNSAVASVKTS 364
           P   +     PG + Q+G+    PP  ++ + +        +     +A A+  T+
Sbjct: 73  PAFSSSCDPVPGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTT 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,597
Number of Sequences: 438
Number of extensions: 4154
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)