Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25p21
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    29   0.42 
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    26   5.1  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   5.1  
SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp...    25   6.8  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   9.0  
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    25   9.0  

>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
            2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 522  IRKWETNIHPRMIKQTMLHPTQDVFGEY 605
            +R+W +N+ P M +Q M+   Q V G +
Sbjct: 934  MRQWRSNVKPEMTQQQMMDQFQKVIGSF 961


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 287 FPTMAILSNRSGYKSLKGESVRNR*H--SRTW 376
           +P M+ L++ SGY  +   SV N  H  + TW
Sbjct: 362 YPAMSRLNSSSGYTCVSSSSVTNSGHTENNTW 393


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
 Frame = -1

Query: 131 IYRYCVLLI-YRFK-FTHNLPTL-FFMTKLNDYLLFLGCHYLS 12
           I+  CV+ + Y F+ F+H+L  + FF+T +   + F+G HYL+
Sbjct: 41  IFANCVVDVKYYFEGFSHSLLFVYFFLTLIILLVSFMGFHYLN 83


>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
           II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 402 MMDYDEASNLWLKTLTIPNTCEVLYRYAICFLNENSNDV 518
           M DY +A  L      +  TC   Y Y IC L+ N+ D+
Sbjct: 23  MQDYLKAKLL----ADVEGTCSGQYGYIICVLDSNTIDI 57


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 389 VVPFTKFWSVTCYEHFLL*GIYIRNG 312
           + P+T+FW     E  ++ G Y +NG
Sbjct: 585 IKPYTEFWDNERVEREIIAGDYFKNG 610


>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 274 FCSGSGSDIFFSGLVFCIFLSSRKNQR 194
           F    GS+IF + L    +L ++KNQR
Sbjct: 135 FLFAKGSEIFIAELTMRAWLHAKKNQR 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,852
Number of Sequences: 5004
Number of extensions: 55082
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)