Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25p21
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0199 - 14160881-14161054,14161151-14161306,14161802-141619... 37 0.011
03_02_0957 - 12710656-12711017,12711479-12711665 29 4.0
06_01_1100 + 9032231-9032419,9033086-9033193 28 5.3
03_05_0207 - 21985340-21985570,21986430-21986636,21999578-219996... 28 5.3
12_01_1109 - 11726818-11727719,11728225-11728394,11730407-117304... 28 7.0
11_01_0702 - 5782202-5782277,5782692-5782760,5782878-5783026,578... 28 7.0
04_04_0725 - 27581658-27581663,27582379-27582481,27582697-275830... 28 7.0
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083... 27 9.2
>08_02_0199 -
14160881-14161054,14161151-14161306,14161802-14161921,
14162046-14162143,14162969-14163041,14164472-14164619,
14165108-14165232,14165611-14165652,14165757-14166074,
14166633-14167559,14167584-14167852,14167946-14168255,
14169281-14169465,14170795-14170901,14171320-14171486
Length = 1072
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 345 VFVTGNTPELGEWDYTKIIMMDYD-EASNLWLKTLTIPNTCEVLYRYAICFLNENSNDVF 521
+FVTG+ LG W+ + + E++NLW + +P Y Y + N+ S+D+
Sbjct: 118 IFVTGDPVTLGCWESDMAVQLSPSVESNNLWTAEIKVPYGVHFKYNYFVREENDASSDII 177
Query: 522 IR 527
R
Sbjct: 178 WR 179
>03_02_0957 - 12710656-12711017,12711479-12711665
Length = 182
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = -2
Query: 349 NTFSFKGFISGTVTENCHCWEISSAFCSGSGSDIFFSGLVFCIFLSSRKNQRCIILILPL 170
N S GF + V C ++ A GSG+ G + L+ N RC +++
Sbjct: 54 NAASVPGFPNAAVQLECGGRAVAGATADGSGAFAINLGKLTAATLTPLLNDRCRVVVTTP 113
Query: 169 FAIC 158
A C
Sbjct: 114 LAAC 117
>06_01_1100 + 9032231-9032419,9033086-9033193
Length = 98
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 306 SVTVPDINPLKEKVFVTGNTPELGEWDYTKIIMMDYDEASNLW 434
+V V I L+ ++ G TPE+ E YT ++++ +A++ W
Sbjct: 8 AVAVVRILILRVSIYDGGGTPEVTEASYTILVLLPPHDAADGW 50
>03_05_0207 -
21985340-21985570,21986430-21986636,21999578-21999667,
21999764-21999945,22000130-22001042,22003184-22003266,
22004622-22004939,22005044-22005107
Length = 695
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +3
Query: 282 LISQQWQFSVTVPDINPLKEKVFVTGNTPELGEWDYTKI--IMMDY-DEASNLWLKTLTI 452
L+ +W+ +T P+ +P K + G T E+ + D K+ + Y DEA N+ +K L
Sbjct: 592 LVCSKWEDEITKPEWHPFK-VIETAGQTKEIIKEDDGKLQALRAQYGDEACNVVVKALVE 650
Query: 453 PN 458
N
Sbjct: 651 MN 652
>12_01_1109 -
11726818-11727719,11728225-11728394,11730407-11730483,
11730559-11730645,11730730-11730816,11731887-11731991,
11732133-11732168,11733636-11733754,11733862-11734067,
11735854-11735906,11735986-11736153,11736507-11736591,
11737845-11738023,11738939-11739070,11739209-11739295,
11739920-11739972,11740820-11740892,11741791-11742442,
11743165-11743229
Length = 1111
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 339 EKVFVTGNTPELGEWDYTKIIMMDYDEASNLWLKTLTIPNTCEVLYRYAI 488
E V + G+T ELG W+ ++ + +N W+ L +P V +++ I
Sbjct: 51 EHVGIIGSTKELGSWEE----QVELEWTTNGWVCQLKLPGETLVEFKFVI 96
>11_01_0702 -
5782202-5782277,5782692-5782760,5782878-5783026,
5783119-5783250,5783343-5783671,5784166-5784172
Length = 253
Score = 27.9 bits (59), Expect = 7.0
Identities = 8/33 (24%), Positives = 19/33 (57%)
Frame = +3
Query: 297 WQFSVTVPDINPLKEKVFVTGNTPELGEWDYTK 395
W +++T D++P + + G+ ++ WD+ K
Sbjct: 44 WSWTITTLDVHPTEPYLLSVGSQDQIKLWDWNK 76
>04_04_0725 -
27581658-27581663,27582379-27582481,27582697-27583025,
27583263-27583365,27583490-27583671,27584135-27584324,
27584570-27584665,27584960-27585054,27585396-27585590
Length = 432
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 348 TLSPLRDLYPERLLRIAIVGKLVQPFV 268
TL PLRDL+P + + G ++PF+
Sbjct: 335 TLQPLRDLFPNYYTKEMLAGNDLKPFL 361
>07_03_1584 +
27907345-27907357,27907693-27908039,27908202-27908319,
27908653-27908705,27908808-27908978,27909447-27909643,
27909729-27909807,27909954-27909992,27910202-27910321,
27910417-27910518,27910654-27910737,27910832-27911074,
27911156-27911281,27911365-27911439,27911534-27911605,
27911807-27911926,27912075-27912172,27912643-27912802,
27912867-27912980,27913029-27913121,27913122-27913319,
27913404-27913497,27914032-27914192
Length = 958
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 300 QFSVTVPDINPLKEKVFVTGNTPELGEWDYTKIIMMDYDEASNLW 434
QF V+ P + V VTG+ P+LG W + ++Y ++W
Sbjct: 164 QFIVSCPRLGA-GSTVVVTGSNPQLGRWQTQDGLKLNY-VGDSIW 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,157,338
Number of Sequences: 37544
Number of extensions: 285498
Number of successful extensions: 529
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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