Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25p21
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   1.4  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   1.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.3  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   5.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   5.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   5.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 37  CFWVVTIYHRID 2
           C W +T YHRI+
Sbjct: 70  CTWTITSYHRIN 81


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +3

Query: 333 LKEKVFVTGNTPELGEWDYTKIIMMDYDEASNLW--LKTLTIPNTCEVLYRYAICFLNEN 506
           LK+  FV  +T    E    +   +D ++ + L    K +T  N+C+   +   CF++ N
Sbjct: 67  LKKVGFVNADTTFNEEKFRERTTKLDSEQVNRLVNNCKDITESNSCKKSSKLLQCFIDNN 126

Query: 507 SNDVF 521
              +F
Sbjct: 127 LMKIF 131


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 375 GEWDYTKIIMMDYDEASN 428
           GE+DYTK    D D+  N
Sbjct: 61  GEYDYTKNYPFDVDQWHN 78


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 72  CWQIMCKFKTIN**NAVSVNKTLVLNKQWQ 161
           C  I+C+  T N     S+NK+L +  +W+
Sbjct: 9   CLGIVCQGTTGNILRGESLNKSLPILHEWK 38


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 72  CWQIMCKFKTIN**NAVSVNKTLVLNKQWQ 161
           C  I+C+  T N     S+NK+L +  +W+
Sbjct: 9   CLGIVCQGTTGNILRGESLNKSLPILHEWK 38


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 72  CWQIMCKFKTIN**NAVSVNKTLVLNKQWQ 161
           C  I+C+  T N     S+NK+L +  +W+
Sbjct: 9   CLGIVCQGTTGNILRGESLNKSLPILHEWK 38


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 367 GVLPVTNTFSFKGFISGTVTENCHCWEISSA 275
           G+LP+       GF+SGT T + +  +I +A
Sbjct: 156 GLLPLLVWIYGGGFMSGTATLDVYNADIMAA 186


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 367 GVLPVTNTFSFKGFISGTVTENCHCWEISSA 275
           G+LP+       GF+SGT T + +  +I +A
Sbjct: 156 GLLPLLVWIYGGGFMSGTATLDVYNADIMAA 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,822
Number of Sequences: 438
Number of extensions: 3846
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)