Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25p19
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   4.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.3  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   7.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.3  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 300 FTCTIYINLCVKLT 341
           FTC I   +C KLT
Sbjct: 636 FTCNIMDAICTKLT 649


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 236 FKKSEDVSVTDGSFHVSDDLT 174
           + KS+D+ V D S + S D+T
Sbjct: 118 YVKSDDIWVPDISVYNSGDMT 138


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 409 FFPFYVMYLFRA 374
           + PF+ MYL RA
Sbjct: 22  WLPFFTMYLVRA 33


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 409 FFPFYVMYLFRA 374
           + PF+ MYL RA
Sbjct: 470 WLPFFTMYLVRA 481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,487
Number of Sequences: 438
Number of extensions: 1934
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)