Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25p14
         (704 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    24   1.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   5.6  

>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
 Frame = -3

Query: 429 SLIHPQVNKEWSSI-----FS*KHIPPRYLRSKIF*KKL----GSVLNIKGIQSIFIFQR 277
           SLI  Q  ++WSS+     F  K +  R  +S++F + +    GS+L + G+  I+IF  
Sbjct: 38  SLIFNQ--EQWSSLNKNFQFIDKKLNNRNSKSRVFYENVNFQFGSILALFGVVQIYIFSG 95

Query: 276 F 274
           F
Sbjct: 96  F 96


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 435 PRSLIHPQVNKEWSSIFS*KHIP 367
           PR+   PQV  +W S     H+P
Sbjct: 265 PRTDFKPQVLPQWPSPIGASHLP 287


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 598 YWLFALYVAYHV 633
           YWLF  ++ +HV
Sbjct: 599 YWLFHCHIEFHV 610


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,098
Number of Sequences: 336
Number of extensions: 3677
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)