Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25p13
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0108 - 25620685-25621115,25621517-25621602,25621963-25622507 32 0.46
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 30 1.4
04_04_1125 + 31085106-31085714 30 1.4
09_06_0096 - 20840855-20841994 30 1.9
05_06_0175 + 26159670-26160119 30 1.9
03_06_0722 - 35751490-35754357 29 2.4
01_05_0266 + 20209005-20209137,20209606-20210183 29 2.4
10_01_0286 - 2978630-2979075,2980050-2980194 29 4.3
01_06_1387 + 36944138-36944147,36944272-36944333,36944825-369448... 29 4.3
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 28 5.6
09_02_0357 + 7788946-7789326,7789620-7789997 28 5.6
07_03_1569 - 27792739-27794175 28 5.6
12_01_0992 + 10067834-10068133 28 7.5
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 28 7.5
02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317 28 7.5
09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602... 27 9.9
05_05_0392 + 24629528-24630442 27 9.9
04_04_1012 - 30104401-30104955,30105066-30106841 27 9.9
04_04_1005 - 30043698-30044252,30044363-30046138 27 9.9
02_05_1251 - 35249550-35249814,35249962-35250347,35250489-352505... 27 9.9
02_04_0028 + 19027510-19027983,19028087-19028278,19028369-190285... 27 9.9
>05_06_0108 - 25620685-25621115,25621517-25621602,25621963-25622507
Length = 353
Score = 31.9 bits (69), Expect = 0.46
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 399 GFPAPAPRAHPALSPTERSPAKAGLHVNFSDKGEVKERREKFLT 530
G PAP P A A SP +P G+ + GEV RE+++T
Sbjct: 138 GTPAPPPPAAEAQSPVTPAPVSTGMEQEMNGGGEVD--REEWIT 179
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -2
Query: 300 VPTITLRAPRPHYPSTGPAPRPHYARPL 217
VPTI P P PS PAP H+ARPL
Sbjct: 266 VPTIGFPPPPPPPPS--PAPIQHFARPL 291
>04_04_1125 + 31085106-31085714
Length = 202
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = -1
Query: 286 PARPTPALP*HWTRPTPALRQASATTLGWQPTTP 185
PA PTP P WT PTPA + T PTTP
Sbjct: 67 PATPTPPTPTPWT-PTPATPPPTPATPA-TPTTP 98
>09_06_0096 - 20840855-20841994
Length = 379
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 303 PVPTITLRAPRPHYPSTGPAPRPHY 229
PVP + R P PH P P P PH+
Sbjct: 304 PVPVVRRRRPTPH-PDGAPPPVPHH 327
>05_06_0175 + 26159670-26160119
Length = 149
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 303 PVPTITLRAPRPHYPSTGPAPRPHYARPLRQPWDGSQRH 187
P P I+ P Y + P PR ++RP+ P G++ H
Sbjct: 26 PPPAISPAPPVQPYETRAPTPRVKHSRPVDVPCRGARLH 64
>03_06_0722 - 35751490-35754357
Length = 955
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 309 ARPVPTITLRAPRPHYPSTGPAPR 238
ARP+P +RAP P P T APR
Sbjct: 138 ARPLPGSLMRAPPPPPPPTAEAPR 161
>01_05_0266 + 20209005-20209137,20209606-20210183
Length = 236
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 207 RVVAEAWRSAGVGRVQC*GSAGVGRA---GLLSEPAALMSLFFKF 332
R+VA +A VGR C GSAG GRA G +AL SL +F
Sbjct: 117 RLVAPGRGAASVGRGGCEGSAGRGRASGRGGAEASSALHSLAARF 161
>10_01_0286 - 2978630-2979075,2980050-2980194
Length = 196
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 276 PRPHYPSTGPAPRPHYARP 220
P P PST PAP+PH +P
Sbjct: 157 PAPAAPSTKPAPKPHPDQP 175
>01_06_1387 +
36944138-36944147,36944272-36944333,36944825-36944865,
36945217-36945286,36946146-36946826,36946907-36946981,
36947057-36947163,36947264-36947370,36947463-36947522,
36947616-36947689,36947788-36947838,36948009-36948058,
36948079-36948123,36948161-36948221,36948284-36948349,
36948700-36948789,36948875-36948940,36949039-36949134,
36949219-36949308,36949371-36949388
Length = 639
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = -2
Query: 279 APRPHYPSTGPAPRPHYARPLRQPWDGSQRHHCDSITSELQKMFQRL 139
A +P + G +P H++R WD ++ C + +++Q + + L
Sbjct: 179 AEKPKWNPRGKSPESHFSRAQSSDWDLTKEFICSADPAQMQVVKEAL 225
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 324 RTAT*ARPVPTITLRAPRPHYPSTGPAPRPHYARPLRQPWDGSQ 193
R A+ AR + R P+ PA P Y PLR+P G +
Sbjct: 325 RAASPARSPASPARRGPQSPQRRVSPAQSPRYQPPLRKPSTGDR 368
>09_02_0357 + 7788946-7789326,7789620-7789997
Length = 252
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Frame = -3
Query: 359 TGAAASVASELEEQRHERG----------RFRQ*PCAPHARTTLALDPPHARTTP 225
T + A A +EEQRH RG R RQ + AR+T A PP A TTP
Sbjct: 95 TASIAMAACRIEEQRHGRGGESFILPRSRRKRQALGSGSARST-APTPPRAHTTP 148
>07_03_1569 - 27792739-27794175
Length = 478
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 256 HWTRPTPALRQASATTLGWQPTTPLRFDHIR 164
H+ P P LR+A A GW LR +R
Sbjct: 41 HYAAPEPHLREARARVHGWDAAGALRLAAVR 71
>12_01_0992 + 10067834-10068133
Length = 99
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 500 GKRATREVPNGEVWQPSDGTDTQATR 577
G+ A R+ NGE+W+ +DG T+ R
Sbjct: 56 GEVALRQRRNGEIWRVADGRGTKKRR 81
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 276 PRPHYPSTGPAPRPHYARP 220
P P+ P + PAP P+Y+ P
Sbjct: 85 PAPYPPESSPAPAPYYSYP 103
>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
Length = 291
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 405 PAPAPRAHPALSPTERSPAKAGLH 476
P PAP PA +P R PA+A H
Sbjct: 149 PPPAPAPRPAPAPAPRVPARAVEH 172
>09_04_0480 +
17958726-17958926,17959294-17959382,17960176-17960242,
17960329-17960444,17960978-17961044,17961158-17961206,
17961630-17961715,17961825-17962078,17962158-17962213,
17962683-17962768,17963047-17963139,17963790-17964219,
17964338-17964861,17964962-17965190,17965271-17965566
Length = 880
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = -3
Query: 281 APHARTTLALDPPHARTTPGLCDNPGMAANDTTAIRS----HQNYKKC 150
AP ++T L+ H T PG+ N + AND R HQ + C
Sbjct: 200 APGSKTFQLLEMIHQSTKPGMLPNALVVANDVDVQRCNLLIHQTKRMC 247
>05_05_0392 + 24629528-24630442
Length = 304
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 405 PAPAPRAHPALSPTERSPAKA 467
P P PR P PT RSP+ A
Sbjct: 175 PPPPPRREPGERPTRRSPSPA 195
>04_04_1012 - 30104401-30104955,30105066-30106841
Length = 776
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 464 GRTAR-QLQR*GRGKRATREVPNGEVWQPSDGTDTQATRGRDV 589
GR AR Q R GRG+R + W+ +D D + RGRD+
Sbjct: 353 GRHARDQGGRGGRGRRRGSGNDHPRPWRRNDRDDDRDDRGRDL 395
>04_04_1005 - 30043698-30044252,30044363-30046138
Length = 776
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 464 GRTAR-QLQR*GRGKRATREVPNGEVWQPSDGTDTQATRGRDV 589
GR AR Q R GRG+R + W+ +D D + RGRD+
Sbjct: 353 GRHARDQGGRGGRGRRRGSGNDHPRPWRRNDRDDDRDDRGRDL 395
>02_05_1251 -
35249550-35249814,35249962-35250347,35250489-35250578,
35250672-35250955,35252213-35252429
Length = 413
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 239 ARTTPGLCDNPGMAANDTTAIRSHQNYKKCFN 144
A ++PG C+ P + A+ + Q +CFN
Sbjct: 139 AMSSPGACNEPSVRADYQALFNAAQGVTECFN 170
>02_04_0028 +
19027510-19027983,19028087-19028278,19028369-19028545,
19029568-19029663,19030487-19030618,19030950-19031008,
19031234-19031321,19031433-19031693
Length = 492
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2
Query: 321 TAT*ARPVPTITLRAPRPHYPSTGPAPRPHYARPLRQPWDGSQR 190
TA A+ + R PRP P P P PLR+P +G R
Sbjct: 80 TAAAAQGGGSAASRPPRPPRPPLPPRPPRPPLPPLREPGEGGGR 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,845,700
Number of Sequences: 37544
Number of extensions: 283653
Number of successful extensions: 1534
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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