Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25p13
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74036-4|CAE17849.1|  112|Caenorhabditis elegans Hypothetical pr...    56   2e-08
AF039720-2|AAB96698.1|  180|Caenorhabditis elegans C.elegans hom...    29   2.2  
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    29   3.8  
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    29   3.8  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    29   3.8  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    29   3.8  
AC024805-15|AAK39331.2|  344|Caenorhabditis elegans Hypothetical...    28   5.0  
Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z69903-1|CAA93772.1|  137|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AL032625-1|CAA21523.1|  326|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z77663-5|CAB01215.1|  365|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z74036-4|CAE17849.1|  112|Caenorhabditis elegans Hypothetical
           protein F55C10.5 protein.
          Length = 112

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/48 (52%), Positives = 30/48 (62%)
 Frame = +3

Query: 474 HVNFSDKGEVKERREKFLTAKYGSHQMALIRKRLAVEMWLYDELXKLY 617
           H  F D     E R + LT KYG HQMALIRKR+ VE W+  E+ KL+
Sbjct: 7   HARFGDSKSRMEDRSRVLTMKYGKHQMALIRKRMKVENWIETEVTKLF 54


>AF039720-2|AAB96698.1|  180|Caenorhabditis elegans C.elegans
           homeobox protein 12 protein.
          Length = 180

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 250 TRPTPALRQASATTLGWQPTTPLRFDHIRITKNVS 146
           T PT  +   SA T   QP  PL +DH+ +T +V+
Sbjct: 68  TSPTSTVTPLSAYTSLVQPVLPLIYDHLALTYSVN 102


>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
            protein.
          Length = 1492

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 285  LRAPRPHYPSTGPAPRPHYARP--LRQPWDGSQRHH 184
            + AP+  +  T  AP P +A P  L+ PW+ + ++H
Sbjct: 1272 IAAPQARFTPTPGAPSPWHATPAELKTPWNTTPQYH 1307


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
            protein Y53H1C.2a protein.
          Length = 1512

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 285  LRAPRPHYPSTGPAPRPHYARP--LRQPWDGSQRHH 184
            + AP+  +  T  AP P +A P  L+ PW+ + ++H
Sbjct: 1292 IAAPQARFTPTPGAPSPWHATPAELKTPWNTTPQYH 1327


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 264 YPSTGPAPRPHYARPLRQPWDG 199
           YP   P P PH+ RP   P DG
Sbjct: 349 YPPFFPPPPPHFMRPSSPPTDG 370


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 264 YPSTGPAPRPHYARPLRQPWDG 199
           YP   P P PH+ RP   P DG
Sbjct: 349 YPPFFPPPPPHFMRPSSPPTDG 370


>AC024805-15|AAK39331.2|  344|Caenorhabditis elegans Hypothetical
           protein Y51H7C.13 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -1

Query: 292 NNPARPTPALP*HWTRPTPALRQASATTLGWQPTTP 185
           N P  P P LP  +T   PA       T   QPT P
Sbjct: 159 NTPPAPEPTLPYEYTTQPPATWPPVENTTPEQPTVP 194


>Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical
           protein F47B8.13 protein.
          Length = 245

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +3

Query: 405 PAPAPRAHPALSPT-ERSPAKAG 470
           PAPAP A PAL+P+ + +PA  G
Sbjct: 121 PAPAPVAEPALAPSPDAAPAADG 143


>Z69903-1|CAA93772.1|  137|Caenorhabditis elegans Hypothetical
           protein F46F2.3 protein.
          Length = 137

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 279 APRPHYPSTGPAPRPHYARPLRQP 208
           A  P+YP   PA +P Y +P  QP
Sbjct: 41  ARAPYYPPQQPAYQPQYQQPAYQP 64


>AL032625-1|CAA21523.1|  326|Caenorhabditis elegans Hypothetical
           protein Y37H9A.2 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -2

Query: 288 TLRAPRPHYPSTGPAPRPHYARPLRQPWDGSQRHHCDSITSELQKMFQRLDQ 133
           TL + R   PS+G +P   + R L +   GS RH+   I +  +K+  R  Q
Sbjct: 42  TLNSNRVAVPSSGSSPLVTFGRSLSKSQVGSDRHNKAGIETLDEKIQPRTRQ 93


>Z77663-5|CAB01215.1|  365|Caenorhabditis elegans Hypothetical
           protein F53F4.6 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 261 PSTGPAPRPHYARPLRQPWDGSQRHHCDSITSELQKMFQR 142
           P   P P  H+  P+ Q    S  HH  +I    Q+++QR
Sbjct: 104 PPQSPTPLHHF--PVNQYSSASSSHHPPTINQSQQQIYQR 141


>U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical
           protein C16B8.3 protein.
          Length = 164

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 561 SVPSDGCHTSPLGTSRVALLPLPY 490
           S  SDG + SP+G     ++PLPY
Sbjct: 14  SSSSDGSYRSPVGFGVTPIMPLPY 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,987,813
Number of Sequences: 27780
Number of extensions: 215767
Number of successful extensions: 879
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)