Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25p13
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.1  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   3.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 297 PTITLRAPRPHYPSTGPAPRPH 232
           P IT ++ +P   + GP P PH
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPH 28


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 195 QRHHCDSITSELQKMFQRLDQ 133
           QR H D +TS+ Q+  Q+  Q
Sbjct: 79  QREHSDRVTSQQQQQQQQQQQ 99


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/25 (24%), Positives = 15/25 (60%)
 Frame = +3

Query: 57  ELNCHNFNFINFCDLALFIYVHTRN 131
           ++ C   + +N C ++L  Y+H ++
Sbjct: 105 DVMCSTASILNLCAISLDRYIHIKD 129


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 539 WQPSDGTDTQATRG 580
           WQP D   T+AT G
Sbjct: 199 WQPEDEECTEATAG 212


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 81  FINFCDLALFIYVHTRNI 134
           F   C +  F Y+H+RNI
Sbjct: 470 FYTACVVEAFDYLHSRNI 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,731
Number of Sequences: 438
Number of extensions: 2510
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)