Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25p10
(918 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0271 + 21445113-21445865,21446727-21446788,21446927-214470... 31 1.7
01_02_0081 + 10943368-10943787 31 1.7
12_02_0693 - 22207582-22207620,22208421-22208597,22209258-222093... 29 5.2
04_04_1404 + 33302080-33303341,33303435-33305307 29 5.2
09_04_0121 - 14840494-14841276 29 6.8
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 29 6.8
03_05_0828 - 28021095-28021694 29 6.8
09_03_0006 + 11426346-11426420,11426733-11427452 28 9.0
02_01_0695 - 5202091-5202498,5204103-5204588 28 9.0
01_03_0255 - 14281004-14281066,14281114-14281203,14281672-142817... 28 9.0
>02_04_0271 +
21445113-21445865,21446727-21446788,21446927-21447027,
21447165-21447248,21448054-21448058,21448193-21448267,
21448339-21448416,21448896-21448952,21449351-21449421,
21449529-21449628,21449758-21449862,21450004-21450066,
21450144-21450266,21450371-21450514,21450598-21450672
Length = 631
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +3
Query: 258 RRRALSPTCEVSSESAPCSSRRAQSRAYCAHCSRAAGCAHCSRAAGCAHCSRAAG 422
RR+ PT SS S RR ++ A+C CS+ RA + + AG
Sbjct: 42 RRKWEGPTSSSSSSSDEHEPRRIRAEAHCPRCSKHMDILFSHRAPPSSSAAAGAG 96
>01_02_0081 + 10943368-10943787
Length = 139
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +3
Query: 300 SAPCSSRRAQSRAYCAHCSR-AAGCAHCSRAAGCAHCSR 413
+A C R + A A C R GC C R GC C R
Sbjct: 59 AALCRRRGGGATAMAALCRRHGGGCDGCGRGGGCDGCGR 97
>12_02_0693 -
22207582-22207620,22208421-22208597,22209258-22209347,
22210215-22210280,22210473-22210570,22210669-22210789,
22210875-22212477,22213332-22213915
Length = 925
Score = 29.1 bits (62), Expect = 5.2
Identities = 26/93 (27%), Positives = 31/93 (33%)
Frame = -3
Query: 610 ERAQPAAREQCAQSARLKQVXXXXXXXXXXXXXXXXXXXXXXXXXGTRPVRAVCTPEVDE 431
ERA ARE+ A AR K R E E
Sbjct: 568 ERATKEARERAAAEARAKAEREARQRAERAAVQRAQKEARERAAVDARERAERAAAEAKE 627
Query: 430 RAQPAAREQCAQPAAREQCAQPAAREQCAQYAR 332
RA A+E+ A A A+ AA E+ Q AR
Sbjct: 628 RAAAEAKEKVATQARDRAAAERAAVERAQQEAR 660
>04_04_1404 + 33302080-33303341,33303435-33305307
Length = 1044
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Frame = -3
Query: 442 EVDERAQPAAREQCAQPAAREQC--AQPAAREQCAQ 341
E +E A+ AAR + A+ AARE+ A+ AA+E+ A+
Sbjct: 462 EAEEAAREAARIRQAEEAAREEAARAEEAAKEEAAR 497
>09_04_0121 - 14840494-14841276
Length = 260
Score = 28.7 bits (61), Expect = 6.8
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 466 PVRAVCTPEVDERAQPAAREQCAQPAAREQCAQPA-AREQ 350
PV+ V ++D+ A AA EQC PA A+PA A EQ
Sbjct: 155 PVQCVTPTKMDQPAVAAAAEQCISPA---NSAEPAVAAEQ 191
>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 264 RALSPT-CEVSSESAPCSSRRAQSRAYCAHCSRAAGCAHCSRAAGCAHCSRAAGCARSST 440
RA+SP C+ + ++A S + + + G + SR + HC++ + RSS+
Sbjct: 1687 RAVSPPLCQTTRQTAGVSQQVPTRPSVAGSIALPVGSSSASRPSLQRHCAQPSHVDRSSS 1746
Query: 441 SG 446
SG
Sbjct: 1747 SG 1748
>03_05_0828 - 28021095-28021694
Length = 199
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 249 RKYRRRALSPTCEVSSESAPCSSRRAQSRAYCAHCSRAAGC 371
R+ R R S C + CSS +++ + YC AA C
Sbjct: 119 RRRRGRTSSRACSKVRDVPTCSSAQSRGKIYCGRGGAAAVC 159
>09_03_0006 + 11426346-11426420,11426733-11427452
Length = 264
Score = 28.3 bits (60), Expect = 9.0
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = -3
Query: 412 REQCAQPAAREQCAQPAAREQCAQYARLCALLLEHGADSLLTSHVGDNALRLYFLHRRP 236
R + PA R CA R + + RLC+LL+ G L + LRL HR P
Sbjct: 61 RRRRRPPALRRCCAAWRHRTRKRRRTRLCSLLVT-GVVDLCSDSASPPVLRLAVGHRCP 118
>02_01_0695 - 5202091-5202498,5204103-5204588
Length = 297
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +3
Query: 309 CSSRRAQSR----AYCAHCSRAAGCAHCSRAAGCAHCSRAA 419
C++ R SR YC C+ AA A + A GC C AA
Sbjct: 25 CAAHRGMSRNECNQYCLTCAAAADDAGGAAAVGCQWCVVAA 65
>01_03_0255 -
14281004-14281066,14281114-14281203,14281672-14281737,
14281837-14281907,14282021-14282153,14282245-14283898,
14285346-14285935
Length = 888
Score = 28.3 bits (60), Expect = 9.0
Identities = 22/61 (36%), Positives = 25/61 (40%)
Frame = -2
Query: 857 AREXXGQPXXTXAVRAVCXPEVDERXQPVAREQCAXVCTPEVDERAQPAAREQCAQSVRQ 678
ARE A +A E ER ARE+ A E ERA ARE+ A R
Sbjct: 611 ARERAAAEARERAAKAAA--EAKERVAEEARERAAKAAA-EARERAATEAREKAAAEARA 667
Query: 677 K 675
K
Sbjct: 668 K 668
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,445,268
Number of Sequences: 37544
Number of extensions: 261222
Number of successful extensions: 1082
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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