Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25o24
         (153 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    18   9.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    18   9.9  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 99  TPSH*FIFNSELFLAQEVVSLSQHYWLYC 13
           TP++  + +S  F    +V L  +  LYC
Sbjct: 189 TPTYAVVSSSISFYVPCIVMLGIYCRLYC 217


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -1

Query: 153  FFFYKIFHIWFYSKFSVK 100
            F F +    W YSK+ ++
Sbjct: 1016 FVFRESVGAWAYSKYGLR 1033


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,662
Number of Sequences: 438
Number of extensions: 334
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2664060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)