Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25o21
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    29   4.3  
04_03_0387 - 15251816-15251905,15251999-15252069,15252098-152523...    29   4.3  
03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514...    29   4.3  
01_07_0379 + 43177978-43178572,43178643-43178674                       29   4.3  
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419...    28   5.7  

>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = +2

Query: 410 GRFLKNEFCRLANLNSLHEWEDKLYPEPD--KNIVVLEPANG---KTTYTIGPRVQGKP 571
           GR L        + + L  W   LY   D    + +LE A G   K  ++IGP +Q KP
Sbjct: 342 GRILSRSHSIALSSSCLSTWHHLLYKLGDLINQLPILEAAFGPVLKIVFSIGPDIQNKP 400


>04_03_0387 -
           15251816-15251905,15251999-15252069,15252098-15252323,
           15252344-15252496,15252570-15252656,15252745-15252948,
           15253038-15253159,15253354-15253507,15254329-15254434,
           15254507-15254617,15256468-15256622
          Length = 492

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 634 NWPKLLLARFYGSKVGKPKSAGLALHSWTDGV 539
           NW + LL  + G+ V KP  A L +  W D +
Sbjct: 171 NWHEYLLGSYLGTLVRKPHLAPLNILKWNDKI 202


>03_03_0025 +
           13848450-13849420,13850921-13851131,13851327-13851459,
           13851576-13851832
          Length = 523

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 102 NHSRQRTSVAWQLNARLAIRAATTTSQSGKEWKVVRTSSW 221
           +H R  +S +   +ARL  R A  TS SG+ W+ V  + W
Sbjct: 174 HHRRNSSSSSSSASARLVTRPAAATSGSGR-WRSVFGAVW 212


>01_07_0379 + 43177978-43178572,43178643-43178674
          Length = 208

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 264 CFTLKAAPLLLLYG-TSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVC 109
           C+    AP +L YG  SC +  L  L R     ++L   +L L+ +  +CA C
Sbjct: 112 CYRWSNAPGVLCYGCDSCKAGVLEQLRRHWHNVTILNVVLLLLLILFYSCACC 164


>09_03_0111 -
           12440818-12441129,12441242-12441585,12441663-12441989,
           12443444-12443602,12443687-12443784,12444745-12444821
          Length = 438

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 359 INVKRGNFSILNCSCFEGRFLKNEFC 436
           + + +      +CSC+ G ++KN FC
Sbjct: 72  MGICKNTIGSFDCSCYPGSYMKNGFC 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,108,006
Number of Sequences: 37544
Number of extensions: 394130
Number of successful extensions: 1320
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)