Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25o20
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    29   0.14 
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    25   2.2  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   3.9  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    25   3.9  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    24   6.8  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    24   6.8  
SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr 2...    24   6.8  
SPCC1442.14c |||adenosine 5'-monophosphoramidase|Schizosaccharom...    23   9.0  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    23   9.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    23   9.0  

>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 29.5 bits (63), Expect = 0.14
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 168 MSKLKSQNRQFYEQPAC*VS*KKVLQFIVGKFTKRRN*AA-KHRQLHTKWR 19
           +S LK +N++F +  A  +   + L   +GK  K+ N    KH QL TKW+
Sbjct: 537 ISILKQRNQKFLKNNATSIQQIQYLDEELGKTLKQLNDLKEKHAQLQTKWK 587


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 64  KKLSREAPPATYKMADLRNE 5
           KK+S +A   + KMADL+NE
Sbjct: 152 KKMSEQAELESEKMADLKNE 171


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = -1

Query: 283 VYVDTFHCPTTVNKRNPTTKXSHALLLQDTHKSRMHKVYE 164
           +Y    + PT+ N++ P    +  +L     ++ +HK++E
Sbjct: 168 LYFGKHNKPTSENRKGPIGIPTEEILTSQNTQAMLHKLFE 207


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -3

Query: 326 QTRTPQKLAXHFVVSIRRHVSLSHNRK*AKSNNKXQPRAPITGHSQITNAQ 174
           Q    Q +  HF+    R+VSL        SNN    R P+T  S+I+N+Q
Sbjct: 123 QAALNQDVGQHFIEEEERNVSL--------SNNSSGQRQPLT-ESKISNSQ 164


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 263 VKRVYVY*LQSAXLTFGACV 322
           +KR Y+Y + S  ++F  CV
Sbjct: 276 IKRAYIYCIISVAISFSICV 295


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 263 VKRVYVY*LQSAXLTFGACV 322
           +KR Y+Y + S  ++F  CV
Sbjct: 276 IKRAYIYCIISVAISFSICV 295


>SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -1

Query: 256 TTVNKRNPTTKXSHALLLQDTHKSRMHKVYE*TKITKSSIL*TAGLLSQLEESSS 92
           T  +KR  + K S  LL Q+ HK+    + +   I KS  L  +  LSQ   SSS
Sbjct: 68  TKADKRYKSEKLSDYLLNQEHHKNSPKIINDVLVIGKSDGLINSFPLSQNYISSS 122


>SPCC1442.14c |||adenosine
           5'-monophosphoramidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 133

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 235 PTTKXSHALLLQDTHKSRMHKV 170
           PT+K  HAL++   H ++MH++
Sbjct: 32  PTSK-GHALVIPKEHAAKMHEL 52


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 216 TRSYYRTLTNHECTRYMSKLKSQNRQFYE 130
           +++ Y +L   EC    S  + QN  FYE
Sbjct: 133 SKNLYDSLKLEECIESWSLNQKQNENFYE 161


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 143  VNFMNSRLAESVRRKFFSLS*VNSLNEETKPRSTASYI 30
            + F NS++AE + R FF+ S V S  ++  P    S I
Sbjct: 2409 LQFSNSKIAEYLWRDFFNAS-VCSFTKDEIPLCIGSII 2445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,267,243
Number of Sequences: 5004
Number of extensions: 20453
Number of successful extensions: 37
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)