Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25o18
         (232 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1129 - 24513568-24514296,24515380-24515817                       27   2.1  
01_01_0474 - 3488739-3488876,3488996-3489118,3489878-3489991,349...    26   4.9  
11_06_0129 - 20397179-20397537,20397749-20400497                       25   6.5  

>08_02_1129 - 24513568-24514296,24515380-24515817
          Length = 388

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 82  Y*D*KTLCELWF*PDRDLKPCRCSPVLFLDDLLIVYEDEENIDI 213
           Y D  +L  LW  P RD   CR  P +   DL +   +EE  D+
Sbjct: 53  YSDPDSLVSLWG-PKRDTSRCRIPPCMIEYDLKMKRGEEEQDDL 95


>01_01_0474 -
           3488739-3488876,3488996-3489118,3489878-3489991,
           3490416-3490452,3490584-3490675,3490878-3490956,
           3491640-3491734,3491858-3491991,3492560-3492833,
           3493743-3494015,3494976-3495512
          Length = 631

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 124 DRDLKPCRCSPVL-FLDDLLIVYEDEENID 210
           D D  PCRC  V+ ++DD +   ++E+ ID
Sbjct: 488 DYDSVPCRCLEVVSWVDDKMERSDEEDKID 517


>11_06_0129 - 20397179-20397537,20397749-20400497
          Length = 1035

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 10  ACACVQNGCFDFSSIYFTFINNISY*D*KTLCELWF*PDRD 132
           AC+ + N   DF +I F F+ N S        E W  PD+D
Sbjct: 794 ACSSIDNSGNDFKAIVFDFMPNGS-------LEGWLHPDKD 827


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,487,837
Number of Sequences: 37544
Number of extensions: 60345
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)